Locus 2634

Sequence ID 3L_DroMel_CAF1
Location 7,238,826 – 7,238,926
Length 100
Max. P 0.514745
window4134

overview

Window 4

Location 7,238,826 – 7,238,926
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.92
Mean single sequence MFE -22.31
Consensus MFE -6.56
Energy contribution -6.04
Covariance contribution -0.52
Combinations/Pair 1.26
Mean z-score -1.82
Structure conservation index 0.29
SVM decision value -0.04
SVM RNA-class probability 0.514745
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7238826 100 + 23771897
----------AUGCAUUUGUGUGAAAAUAUUGCGCGAAAUUU--UCAAACAACUUUC-GUGCAACUUCCGUUUGCGCAGUUAGCAUUAGUUUAUUUU-C------UAUUUUGCAAUUAUA
----------.((((...(((.(((((((((((((((((.((--......)).))))-))))))........(((.......)))......))))))-)------)))..))))...... ( -23.00)
>DroSec_CAF1 20255 104 + 1
------------ACAUUUGUAUAGAAAUAUUGCGCGAAAUUU--UCCAACAACUUUC-GUGCAACUUUCGUUUGCGCAGUUUGCAUUAGUUUGUGAU-CAUAAAUUAUUUUGCAUUUAUA
------------......(((..((((..((((((((((.((--......)).))))-)))))).))))...)))......((((.((((((((...-.))))))))...))))...... ( -23.30)
>DroSim_CAF1 20312 104 + 1
------------ACAUUUGUAUAGAAAUAUUGCGCGAAAUUU--UCCAACAACUUUC-AUGCAACUUUCAUUUGCGCAGUUUGCAUUAGUUUACUUU-CAUAAAUUAUUUUGCAAUUAUA
------------................((((((((((....--.....((......-.)).........))))))))))(((((.(((((((....-..)))))))...)))))..... ( -16.57)
>DroEre_CAF1 20897 115 + 1
UCGCGCUCCACGGCAUUUGUGUGAAAAUGUUGCGCGAAAUUU--UUCAACAACUUUC-GCACAACUUCCGUUU--GCAGUUUGCAUUAGUUUAUUUUCCAUAAAUUUCAAUGGCUUUAUA
..((((...((((...((((((((((..((((...(((....--)))..))))))))-))))))...))))..--))......(((((((((((.....)))))))..))))))...... ( -25.80)
>DroYak_CAF1 22045 109 + 1
----------CGACAUUUGUAUGAAAAUAUUGCGCGGAAUUUUGUUUAACAACUUUCGGCACAACUUCCGCUGGCGCAGUUUGCAUUAGUUUAUUUU-CAUAAAGUUCUAUGGCAUUAUA
----------.((.((((.(((((((((((((.((.(((..(((.....)))..))).)).))).....(((((.((.....)).))))).))))))-))))))))))............ ( -22.90)
>consensus
____________ACAUUUGUAUGAAAAUAUUGCGCGAAAUUU__UCCAACAACUUUC_GUGCAACUUCCGUUUGCGCAGUUUGCAUUAGUUUAUUUU_CAUAAAUUAUUUUGCAAUUAUA
...................(((((.....((((((((((.((........)).)))).))))))...........((.....))...............................))))) ( -6.56 =  -6.04 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006