Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,238,635 – 7,238,725 |
Length | 90 |
Max. P | 0.919333 |
Location | 7,238,635 – 7,238,725 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.84 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -22.32 |
Energy contribution | -22.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.73 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7238635 90 + 23771897 AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC-----------CCCGCACAUCCCCCUCU--------- ....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------))))))...........--------- ( -30.00) >DroSec_CAF1 20074 90 + 1 AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC-----------CCCGCACUUCCCGCUCU--------- ....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------))))))...........--------- ( -30.00) >DroSim_CAF1 20126 99 + 1 AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUGUGGGUCACUUUUC-----------CCCGCACUUCCCGCUCUCUCUCUCUC ....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------)))))).................... ( -29.80) >DroEre_CAF1 20694 90 + 1 AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUGC-----------GCCGCAAAUCCCGCUAU--------- .(((((((((((((((((......)))))))).))).....(((((((((((((......)))))..))))).-----------)))))))))........--------- ( -31.50) >DroYak_CAF1 21846 101 + 1 AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCACAGGCCCAACUCUCUGGGUCACUUUCCCCGCCCCGCCCCCCGCAAAUCCCACUUC--------- .(((((((((((((((((......)))))))).)))...(((((....((((((......)))))).........))))).......))))))........--------- ( -32.02) >consensus AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC___________CCCGCACAUCCCGCUCU_________ ....((((((((((((((......)))))))).)))....((.(((((((......))))))).)).....................))).................... (-22.32 = -22.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006