| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,237,735 – 7,237,835 |
| Length | 100 |
| Max. P | 0.968220 |
| Location | 7,237,735 – 7,237,835 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.15 |
| Mean single sequence MFE | -15.94 |
| Consensus MFE | -5.18 |
| Energy contribution | -6.14 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.32 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7237735 100 - 23771897 UUCGAUUUUUCCCACCGGACCACGGUGCAUUUUG-CAAUCUCCGCGAUUGCCAAA--CA-------AACAAAACAAAGUUUUACUCCAACGAAAAAAAAAA----------AAAAAAAUC .....((((((.(((((.....)))))..(((.(-(((((.....)))))).)))--..-------........................)))))).....----------......... ( -17.30) >DroSec_CAF1 19238 75 - 1 UUCGAUUUUGUCCAA-------------UUUUUG-CAAUCUCCGCGAUUGC------------------AAAACAAAGUUGUACUCCAAUGAAAAUAA-------------AAAAAAAUC ..(((((((((....-------------..((((-(((((.....))))))------------------)))))))))))).................-------------......... ( -15.70) >DroSim_CAF1 19249 84 - 1 UUCGAUUUUGUCCAA-------------UUUUUG-CAAUCUCCGCGAUUGCCAAA--CA-------AACAAAACAAAGUUGUACUCCAAUGAAAAUAA-------------AAAAAAAUC ..(((((((((....-------------.(((.(-(((((.....)))))).)))--..-------......))))))))).................-------------......... ( -12.22) >DroEre_CAF1 19750 108 - 1 UUCGAUUUCCUCUACCGGAGCACGGUGCA-UUUG-CAAUCUCCGCGAUUGCCAAA--CAAUACAAUAGCAAAACAAAGUUGUACUCCAAUCCA--------AAAAAGCCAACGAAAAAUC ((((.........((((.....))))((.-...(-(((((.....))))))....--...((((((...........))))))..........--------.....))...))))..... ( -18.20) >DroYak_CAF1 20849 119 - 1 UUCGAUUUCUUCUACCGGACCAAGUUGCA-AUUGCCAAUCGCCGCGAUUGCCAAACACAAUACAAUAGCAAAACAAAGUUGUACUCCAACAAAAAAAAAAAAAAAAGCAAACGAAAAAUC (((((.....))....(((....((((((-(((((........))))))))..)))....((((((...........)))))).))).........................)))..... ( -16.30) >consensus UUCGAUUUUGUCCACCGGA_CA_G_UGCAUUUUG_CAAUCUCCGCGAUUGCCAAA__CA_______AACAAAACAAAGUUGUACUCCAAUGAAAAAAA_____________AAAAAAAUC ...((((((......................(((.(((((.....))))).))).......................((((.....))))........................)))))) ( -5.18 = -6.14 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:05 2006