| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,237,055 – 7,237,170 |
| Length | 115 |
| Max. P | 0.730232 |
| Location | 7,237,055 – 7,237,170 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.75 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -20.74 |
| Energy contribution | -21.19 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7237055 115 + 23771897 CGAGAAAACAAACAUUGCCAAUG---UGAUUUGGUUGUGUGGAGAAAAAUAUUAAUGUAAAUUGGAAAUAUGAAGGCGAUGACAUCGUCGCCGCUGACGCUUUGCAAAUGUGCUUGUG ((((...(((.((((.(((((..---....))))).))))...............((((((.............(((((((....)))))))((....))))))))..))).)))).. ( -30.50) >DroSec_CAF1 18570 102 + 1 CGAGAAAGCAAACAUUGGCAAUGCGGUGGUUUGGUUGUGUGGAGAAAAAUAUUAAUGCA-------AAUAUGAAGGCGAUGACAUCGUCGCCG------CUUUGCAAAUGUGCUU--- .....((((..(((((.((((.((....((((((((((((........))).)))).))-------))).....(((((((....))))))))------).)))).)))))))))--- ( -29.60) >DroSim_CAF1 18577 105 + 1 CGAGAAAACAAACAUUGGCAAUGCGAUGGUUUGGUUGUGUGGAGAAAAAUAUUAAUGCA-------AAUAUGAAGGCGAUGACAUCGUCGCCG------CUCUGCCAAUGUGCUUCUG ..((((.....(((((((((..((....((((((((((((........))).)))).))-------))).....(((((((....))))))))------)..)))))))))..)))). ( -34.40) >consensus CGAGAAAACAAACAUUGGCAAUGCG_UGGUUUGGUUGUGUGGAGAAAAAUAUUAAUGCA_______AAUAUGAAGGCGAUGACAUCGUCGCCG______CUUUGCAAAUGUGCUU_UG .(((...(((..(((((......)))))..........(..(((....(((((.............)))))...(((((((....))))))).......)))..)...))).)))... (-20.74 = -21.19 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:04 2006