Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,236,787 – 7,236,895 |
Length | 108 |
Max. P | 0.510046 |
Location | 7,236,787 – 7,236,895 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -13.59 |
Energy contribution | -13.71 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.57 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7236787 108 + 23771897 CACACAACUUCCCU-UCAUAUA-CAUAUAUACAUAUAUAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------AUACAAAAACUGGCUUAC ..(((((((..((.-.(((((.-..(((((....)))))...)))))((((....))))..))...)))))))(((((..............----------..........)))))... ( -21.16) >DroSec_CAF1 18312 98 + 1 CACACAACUUCCCU-UCAUAU-----AUA------UACAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------AUACAAAAACUGGCUUAC ........(((((.-((....-----...------......))...)))))((((..(((((((...)))))))..))))............----------.................. ( -17.22) >DroSim_CAF1 18315 102 + 1 CACACAACUUCCCU-UCAUAUA-CAUAUA------UACAGAGAUAUGGGAAUCUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------ACACAAAAACUGGCUUAC ..(((((((..((.-.......-(((((.------.......)))))((((....))))..))...)))))))(((((..............----------..........)))))... ( -18.06) >DroEre_CAF1 18827 96 + 1 CACACAACUUCCUCUG-------CAUAUA------UAUAGCGAUAUGGGAAUGUAUUCCACGGCAUGGUUGUGGGCAACAAAAUAAAUAAA-----------AUACAAAAACUGGCUUAC ..(((((((.((....-------(((((.------.......)))))((((....))))..))...)))))))(....)............-----------.................. ( -17.00) >DroYak_CAF1 19911 114 + 1 CACACAACUUCCUCGCCAUAUCUCAUAUA------UAUAGAGAUAUGGGAAUGUAUUCCACGGCAUCGUUGUGGGCAACAAAAUAAAUAAAAAUACAAAAAAAAACAAAAACUGGCUUAC ..........((((.(((((((((.....------....))))))))))).(((..((((((((...))))))))..))).................................))..... ( -23.20) >consensus CACACAACUUCCCU_UCAUAU__CAUAUA______UAUAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA__________AUACAAAAACUGGCUUAC ........(((((.................................)))))((((.((((((((...)))))))).))))........................................ (-13.59 = -13.71 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006