| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,236,304 – 7,236,423 |
| Length | 119 |
| Max. P | 0.859944 |
| Location | 7,236,304 – 7,236,423 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.92 |
| Mean single sequence MFE | -36.78 |
| Consensus MFE | -30.08 |
| Energy contribution | -31.24 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7236304 119 - 23771897 UUCAGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUUUUGCCUU-UGCGUGGGUGGGUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUAUCAGCCAAAUGUUGGCUGGU (((((..((((((...((((((.(((((.......)))))))))))...-......((((.((((((.....)))))).))))))))))..)))))...((((((((.....)))))))) ( -42.20) >DroSec_CAF1 17855 117 - 1 UUCAGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUGUUGACUU-UGCGUGGGUG-GUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUGUCAACCAAAUGUUGGCUG-U (((((..((((((..(((((((((((((.......))))).))....))-))))..((((-((((((.....)))))).))))))))))..)))))...((((((.....))))))..-. ( -34.50) >DroSim_CAF1 17870 117 - 1 UUCAGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUUUUGCCUU-UGCGUGGGUG-GUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUGUCAGCCAAAUGUUGUCUG-U ..(((...((((....((((((.(((((.......)))))))))))...-((((((((((-(.....))))...)))))))..(((((((.(.....).)))))))....)))).)))-. ( -33.60) >DroEre_CAF1 18342 117 - 1 UUCGGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUUUUGACUC-UGCGUGGGUG-GUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUGUCAGCCAAAUGUUGGCUU-A (((((((.((((...........))))))))))).(((((.(((.....-((((((((((-(.....))))...)))))))..(((((((.(.....).)))))))))).)))))...-. ( -32.90) >DroYak_CAF1 19432 118 - 1 UUCGGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUUUUGCCUCUUGCGUGGGCG-GUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUGUCAGCCAAAUGUUGGCUG-A (((((..((((((...((((((.(((((.......)))))))))))....(((((((.((-(((....))))).)))))))..))))))..)))))....(((((((.....))))))-) ( -40.70) >consensus UUCAGUUUCAAUUUCCGCAAAACGUUGAACCGAACUCAGCUUUUGCCUU_UGCGUGGGUG_GUGAUUCCAUUGAUUACGCACCGGUUGACCCUGAAAGUGUCAGCCAAAUGUUGGCUG_U (((((..((((((...((((((.(((((.......)))))))))))..........((((.((((((.....)))))).))))))))))..))))).....((((((.....)))))).. (-30.08 = -31.24 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006