Locus 2626

Sequence ID 3L_DroMel_CAF1
Location 7,235,908 – 7,236,017
Length 109
Max. P 0.795824
window4124

overview

Window 4

Location 7,235,908 – 7,236,017
Length 109
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 87.08
Mean single sequence MFE -33.48
Consensus MFE -21.61
Energy contribution -23.43
Covariance contribution 1.81
Combinations/Pair 1.05
Mean z-score -2.58
Structure conservation index 0.65
SVM decision value 0.60
SVM RNA-class probability 0.795824
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7235908 109 + 23771897
AACGCUU-----UUCCUAGCUU----AAUGAUAAUACUGGUUGGAUAAGGGCUUAUGUCAAAGCAUUUCCUCGAUAUGCCUUUUGCCAUCACGAUUGUCACAUUCGGGCGAAAAGUGA
..(((((-----(((...(((.----.((((((((..((((.((..((((((..(((((.............)))))))))))..))))))..)))))))...)..))))))))))). ( -30.32)
>DroSec_CAF1 17463 108 + 1
AACGCUU-----UUCCUAGUCU-----AUGAUAAUAUUGGUUGGGUAAGGGCUUAUGUCAAAGCAUUCGCUUGAUAUGCCUUUUGCCAUCACGAUUGUCACUUUCGGGCGAAAAGUGA
..(((((-----(((((.....-----.(((((((..((((.((..((((((..(((((((.((....)))))))))))))))..))))))..)))))))......)).)))))))). ( -36.00)
>DroSim_CAF1 17471 113 + 1
AACGCUU-----UUCCUAGUCUGCCAUAUGAUAAUAUUGGUUGGGUAAGGGCUUAUGUCAAAGCAUUCGCUUGAUAUGCCUUUUGCCAUCACGAUUGUCACUUUCGGGCGAAAAGUGA
..(((((-----(((...(((((.....(((((((..((((.((..((((((..(((((((.((....)))))))))))))))..))))))..)))))))....))))))))))))). ( -38.10)
>DroEre_CAF1 17952 117 + 1
AACGCUUUCCUUUUCAUUGUUUGUCAUAUGAUAAAAU-CGUUGGGUAAGGGCUUAUGUCAAAGCAUUUCCUCGAUAUGCCUAUUGCCAUCACGAUUGUCAUUUUCGGGCGAAAAGAGA
.......((((((((...(((((....((((((..((-(((..(((((((((..(((((.............))))))))).)))))...)))))))))))...))))))))))).)) ( -29.52)
>consensus
AACGCUU_____UUCCUAGUCU____UAUGAUAAUAUUGGUUGGGUAAGGGCUUAUGUCAAAGCAUUCCCUCGAUAUGCCUUUUGCCAUCACGAUUGUCACUUUCGGGCGAAAAGUGA
..(((((.....(((...(((((.....(((((((....(.(((..((((((..(((((((.((....)))))))))))))))..))).)...)))))))....))))))))))))). (-21.61 = -23.43 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:59 2006