Locus 262

Sequence ID 3L_DroMel_CAF1
Location 732,638 – 732,735
Length 97
Max. P 0.738175
window391

overview

Window 1

Location 732,638 – 732,735
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -27.77
Consensus MFE -19.24
Energy contribution -21.05
Covariance contribution 1.81
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value 0.44
SVM RNA-class probability 0.738175
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 732638 97 - 23771897
UAAGAGGUGAGUUGCGGAGAGGUCUGCUUUGGUGGACAAGAAUGUGGAAUUAAGGGGUAGCCCUUCGUGUUUGGUCUUCACAGUCAUCAUUUCAAAU
...(((((((((((.(((((.(((..(....)..)))..(((..(((.....((((....)))))))..)))..))))).))).).))))))).... ( -28.70)
>DroSec_CAF1 88138 97 - 1
UAAGAGGAAUGUUUUGGAGAGGUCUGCUUUGGUGGACACGAAUGUGGAAAUAAGGGGUAGCCCUUCGUGUUUGGUCUUCAGAGUCUUCAUUUCAAAU
...(((((...(((((((((.(((..(....)..))).((((..(((.....((((....)))))))..)))).))))))))))))))......... ( -29.80)
>DroSim_CAF1 89615 97 - 1
AAAGAGGAAUGUUUUGGAGAGGUCUGCUUUGGUGGACAAGAAUCUGGAAUUAAGGGGUAGCCCUUCGUGUUUGGUCUUCAGAGUCUUCAUUUCAAAU
...(((((...(((((((((.(((..(....)..)))......(..((...(((((....)))))....))..)))))))))))))))......... ( -27.80)
>DroEre_CAF1 92882 94 - 1
CAAGAGGACUGUUGUGGAGAGGUCUGCUUAAGUGGACUGUAAUCUGGAAUUGAGGGGAAGCCAUUCGUGUUUAGUCUUCAGA---UUCUUUUUAAAU
...((((((((((.((((..((((..(....)..))))....)))).))..(((((....)).))).....))))))))...---............ ( -24.80)
>consensus
UAAGAGGAAUGUUGUGGAGAGGUCUGCUUUGGUGGACAAGAAUCUGGAAUUAAGGGGUAGCCCUUCGUGUUUGGUCUUCAGAGUCUUCAUUUCAAAU
...(((((...(((((((((.(((..(....)..))).........((((.(((((....)))))...))))..))))))))))))))......... (-19.24 = -21.05 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:44 2006