| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,231,129 – 7,231,225 |
| Length | 96 |
| Max. P | 0.733340 |
| Location | 7,231,129 – 7,231,225 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -10.17 |
| Consensus MFE | -8.07 |
| Energy contribution | -9.07 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.733340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7231129 96 - 23771897 CCACAAAAUAUAAAUAAAAAAACAAAAGAACCGAAGGUUGUAAACAAUUUUUGCUGUUGCUUCAAGUGAGCUUGCAAAAUAUAAAAAAAACAAAAU ........((((...................(((((((((....))))))))).(((.((((.....))))..)))...))))............. ( -10.60) >DroSec_CAF1 12839 77 - 1 ---------------AAAAAAACCAAACAACCGAAUGCUGUAAACAAUUUUUGCUGUUGCCUCAAGUGAGCUUGCAAAAAAUAAAAAAA----AAG ---------------................................(((((((....((.((....))))..))))))).........----... ( -8.40) >DroSim_CAF1 12752 83 - 1 ----AAAAUAUAA--AAAAAAGCAAAACAACCGAAUGUUGUAAACAAUUUUUGCUGUUGCCUCAAGUGAGCUUGCAAAAAAUAAAA-------AAU ----.........--...........(((((.....)))))......(((((((....((.((....))))..)))))))......-------... ( -11.50) >consensus ____AAAAUAUAA__AAAAAAACAAAACAACCGAAUGUUGUAAACAAUUUUUGCUGUUGCCUCAAGUGAGCUUGCAAAAAAUAAAAAAA____AAU ..........................(((((.....)))))......(((((((....((.((....))))..)))))))................ ( -8.07 = -9.07 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:39 2006