Locus 2618

Sequence ID 3L_DroMel_CAF1
Location 7,230,978 – 7,231,093
Length 115
Max. P 0.796858
window4101

overview

Window 1

Location 7,230,978 – 7,231,093
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -31.85
Consensus MFE -22.41
Energy contribution -22.45
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.70
SVM decision value 0.60
SVM RNA-class probability 0.796858
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7230978 115 - 23771897
-----GAAGGAGGAAGUGGCCUAGCUAAGGCCGUUAAGUCAACUUUCUCCACUCAAUUGUUGGGAUUUAAUAUUAUUUGCACCGCCACAAAAGCAAUGCCAAUUGUAAACUUCUUUUCGA
-----...((((((((((((((.....)))))(......).)))))))))......(((..((((.....(((.(((.(((..((.......))..))).))).)))....))))..))) ( -27.80)
>DroSec_CAF1 12677 104 - 1
--UUACGAGGAGGAAGUGGCCUAGCUAAGGCCGUUAAGUCAACUUUCUCCACUCGAUUGUGGGGAUUUAAUAUUGUUUGCA--------------ACGCCAAUUGUAAACUUCUUUUCGA
--...(((((((((...(((((.....))))).............(((((((......))))))).........(((((((--------------(......))))))))))))))))). ( -34.70)
>DroSim_CAF1 12582 104 - 1
--UUGGGAGGAGGAAGUGGCCUAGCUAAGGCCGUUAAGUCAACUUUCUCCACCCGAUUGUUGGGAUUUAAUAUUGUUUGCA--------------ACGCCAAUUGUAAACUUCUUUUCGA
--(((((.((((((((((((((.....)))))(......).))))))))).)))))(((..((((.........(((((((--------------(......)))))))).))))..))) ( -35.10)
>DroEre_CAF1 12906 117 - 1
--UUUUUGGUAGGAAGUGGCCUAGCUAAGGCCGCUAAGUCAACUUUCUCCACUCGAUUGUUGGGAUUUAAUAUUGUUUGCCUCA-UACACCAGCAAUGCCAAUUGUAAACUUCUUUUCGA
--...(((((.(((((((((((.....))))))))(((....)))..))).....((((((((.....................-....))))))))))))).................. ( -29.01)
>DroYak_CAF1 13870 119 - 1
GGUUUUUGGGAGGAAGUGGCCUAGCUAAGGCCGUUAAGUCAACUUUCUCCAGUCGAUUGUUGGGAUUUAAUAUUGUUUGCCUCA-CUCAACAGCAAUGCCAAUUGUAAGCUUCUUUGCGA
(((..(((((((((((((((((.....)))))(......).)))))))))......((((((((....................-))))))))))).)))..(((((((....))))))) ( -32.65)
>consensus
__UUUGGAGGAGGAAGUGGCCUAGCUAAGGCCGUUAAGUCAACUUUCUCCACUCGAUUGUUGGGAUUUAAUAUUGUUUGCA_C____CA__AGCAAUGCCAAUUGUAAACUUCUUUUCGA
........((((((((((((((.....)))))(......).)))))))))......(((..((((.....(((.(((.((.................)).))).)))....))))..))) (-22.41 = -22.45 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:38 2006