Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,230,736 – 7,230,836 |
Length | 100 |
Max. P | 0.793016 |
Location | 7,230,736 – 7,230,836 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.94 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -20.81 |
Energy contribution | -20.77 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.67 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7230736 100 + 23771897 GCCCGCUCAUGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGGUAAUGCCAAU------GGCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG--------------GGCAUUGGGCGAUG ((((((.(..(((....)))...(((((((....((((.......))))...------.....(....)...........)))))))).)))--------------)))........... ( -33.80) >DroSec_CAF1 12456 79 + 1 GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCA------AAGGC---------------------AAAUUAAUUAUGGCCAAGUGCG--------------GGCACUGGGCGAUG ..(((((((.((.(((..((..((((((((.....((.------...))---------------------..........)))))))).)).--------------)))))))))))).. ( -27.36) >DroSim_CAF1 12355 85 + 1 GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGGCAAAGGC---------------------AAAUUAAUUAUGGCCAAGUGCG--------------GGCACUGGGCGAUG ..(((((((.((.(((..((..((((((((...........((....))---------------------..........)))))))).)).--------------)))))))))))).. ( -29.00) >DroEre_CAF1 12693 87 + 1 GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAA-AG------------------------GCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG--------GCAUGGGGCAUUGGGCGAUG ..(((((((.(((.(((.(((.((((((((.(-(.------------------------....(....)........)).))))))))...)--------)).))))))..))))))).. ( -28.42) >DroYak_CAF1 13611 119 + 1 GCUCGCUCACGUCGUCAGGCAUUUUGGCCAAA-AGGCGAAGGCAACGGCACUGGACAAGGCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCGAGCAUUGGGCAUUGGGCAUUGGGCGAUG ..(((((((.(((.....((((((.(((((..-..((....))....((.((.....))))...................)))))))))))..((.....))....)))..))))))).. ( -35.90) >consensus GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGG_AAAGGC__________GCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG______________GGCAUUGGGCGAUG ..(((((((.(((....)))...(((((((..................................................)))))))((((................))))))))))).. (-20.81 = -20.77 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:37 2006