| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,230,596 – 7,230,690 |
| Length | 94 |
| Max. P | 0.615645 |
| Location | 7,230,596 – 7,230,690 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.29 |
| Mean single sequence MFE | -25.26 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.32 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7230596 94 + 23771897 AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCAAAAAGAAUUCAAAUG-GGCGGUCAGUUGGCAAAACAUUUUGACAACGACAAUGGCCG-------AAAAA------------------ .......(((((((....((((....)))))).....(....)..)))-))((((((((((.((((....))))....))))..))))))-------.....------------------ ( -20.80) >DroSec_CAF1 12296 101 + 1 AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCAAAAAGAAUUCAAAUG-GGCGGUCAGUUGGCAAAACAUUUUGACAACGGCAAUGGCCA-------AAAGCC-----------GUGCGA .....((((..(((....)))........(((.....(....).....-))))))).((((.((((....)))).)))).(((.((((..-------...)))-----------)))).. ( -25.40) >DroSim_CAF1 12197 101 + 1 AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCAAAAAGAAUUCAAAUG-GGCGGUCAGUUGGCAAAACAUUUUGACAACGACAAAAGGCA-------AAAGCC-----------GUGCGA ...(((.(((((((....((((....)))))).....(....)..)))-))).(((.((((.((((....)))).)))))))....(((.-------...)))-----------..)).. ( -24.10) >DroEre_CAF1 12531 107 + 1 AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCGAAAA-AAUUCAAAUG-GGCGGUCAGUUGGCAAAACAAUUUGACAACGACAAUAGCCAUGCGGCAAAAGCCAAA----GCC------- ...(((.(((((((....((((....))))))(((..-..)))..)))-))).(((.((((.((((....)))).))))))).........))(((....)))...----...------- ( -26.20) >DroYak_CAF1 13441 118 + 1 AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCGAAA--AAUUCAAAUGGGGCGGUCAGUUGGCAAAACAUUUUGACAACGACAAUAGCCAUGCGGCAAAUGCCACAAAAAACCCGUGCGA ...((......(((....((((....)))))))...--.......(((((((.(((.((((.((((....)))).)))))))....))).((.(((....))).))......)))))).. ( -29.80) >consensus AAAGCGACCCAUGGUAAUCCAACAAGUUGGCCAAAAAGAAUUCAAAUG_GGCGGUCAGUUGGCAAAACAUUUUGACAACGACAAUAGCCA_______AAAGCC___________GUGCGA ...........(((....((((....)))))))................(((.(((.((((.((((....)))).)))))))....)))............................... (-16.52 = -16.32 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:36 2006