Locus 2615

Sequence ID 3L_DroMel_CAF1
Location 7,230,150 – 7,230,252
Length 102
Max. P 0.858408
window4098

overview

Window 8

Location 7,230,150 – 7,230,252
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.56
Mean single sequence MFE -30.68
Consensus MFE -26.12
Energy contribution -26.36
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.85
SVM decision value 0.82
SVM RNA-class probability 0.858408
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7230150 102 - 23771897
UCCUGCUCUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCAGGUCGUUUUCUUUGGCGUGUUAACAGCCGCACCGGUGUCUCCAGCUU------------------
....(((...(((((((....((((((...((...(((((...............)))))....))...))))))....)))))))..((.....)))))..------------------ ( -31.86)
>DroSec_CAF1 11849 101 - 1
-CCUGCUCUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCAGGUCGUUUUCUUUGGCGUGUUAACAGCCGCACCGGUGUCUCCAGCUU------------------
-...(((...(((((((....((((((...((...(((((...............)))))....))...))))))....)))))))..((.....)))))..------------------ ( -31.86)
>DroSim_CAF1 11756 102 - 1
CCCUGCUCUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCAGGUCGUUUUCUUUGGUGUGUUAACAGCCGCACCGGUGUCUCCAGCUU------------------
....(((...(((((((....((((((...((...(((((...............)))))....))...))))))....)))))))..((.....)))))..------------------ ( -29.96)
>DroEre_CAF1 12078 107 - 1
CCACCCUCUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCAAGUCGUU-UCUUUGGCGUGUUAACAGCCGCACCGGUGUCUC------------CAUCUCCAGCUC
.((((.....(((((((....((((((....((((.((.....)).))))...((((.....-..))))))))))....)))))))..))))....------------............ ( -29.50)
>DroYak_CAF1 12942 119 - 1
CCACUCUUUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCGAGUCGUU-UCUUUGGCGUGUUAACAGCCGCACCGGUGUCUCCAGCCUCAGCUCCAUCUCCAGCUU
..........(((((((....((((((....((((.((.....)).))))....(((....)-))....))))))....)))))))..(((.......)))..((((........)))). ( -30.20)
>consensus
CCCUGCUCUUUGCGGCUAAUUACACGCAUUAGUGUUGGCCAGUCCCACAUCCCCAGGUCGUUUUCUUUGGCGUGUUAACAGCCGCACCGGUGUCUCCAGCUU__________________
..........(((((((....((((((...((...(((((...............)))))....))...))))))....))))))).................................. (-26.12 = -26.36 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:35 2006