| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 727,708 – 727,804 |
| Length | 96 |
| Max. P | 0.582434 |
| Location | 727,708 – 727,804 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 91.63 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -21.93 |
| Energy contribution | -22.41 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 727708 96 + 23771897 GCCAUUUGCCACCGCACGACACCGGCUCUUCGUUCCCAUCCAUCAUCGCAGAUAUGACAAGUGACCGGCCAAGUGGGCAACUGGGCAAGUGGCCUU ((((((((((...((.((....)))).....((((((((((.((((..((....))....))))..))....))))).)))..))))))))))... ( -32.00) >DroSec_CAF1 83200 88 + 1 GCCAUUUGCCACUGCACGACACCGGCUCUUCGCUCCCAUCCAUCAUCGCAGAUAUGACAAGUGGCCGGCCAAGUGG--------GCAAGUGGCCUU ((((((((((....(((....(((((....((((..(((..(((......))))))...)))))))))....))))--------)))))))))... ( -31.60) >DroSim_CAF1 84720 88 + 1 GCCAUUUGCCACCGCACGACACCGGCUCUUCGCUCCCAUCCAUCAUCGCAGAUAUGACAAGUGGCCGGCCAAGUGG--------GCAAGUGGCCUU ((((((((((....(((....(((((....((((..(((..(((......))))))...)))))))))....))))--------)))))))))... ( -31.60) >DroEre_CAF1 87688 84 + 1 GCCAUUUGCCACCGCACGACACCGGCUCUUCGUUCCCAUCCAUCAUCGCAGAUAUGACAAGUG----GCCAAGUGG--------GCAAGUGGCCUU ((((((((((..(....).(((.(((((((.(((...(((..........)))..)))))).)----)))..))))--------)))))))))... ( -25.60) >DroYak_CAF1 88928 84 + 1 GCCAUUUGCCACCGCACGACACCGGCUCUCCGUUCCCAUCCAUCAUCCCAGAUAUGACAAGUG----GCCAAGUGG--------GCAAGUGGCCUU ((((((((((..(((.......(((....)))...((((...((((.......))))...)))----)....))))--------)))))))))... ( -25.00) >consensus GCCAUUUGCCACCGCACGACACCGGCUCUUCGUUCCCAUCCAUCAUCGCAGAUAUGACAAGUG_CCGGCCAAGUGG________GCAAGUGGCCUU (((((((((..........(((.((((..(((((..(((..(((......))))))...)))))..))))..))).........)))))))))... (-21.93 = -22.41 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:43 2006