Locus 2609

Sequence ID 3L_DroMel_CAF1
Location 7,227,971 – 7,228,086
Length 115
Max. P 0.982626
window4086

overview

Window 6

Location 7,227,971 – 7,228,086
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -24.35
Consensus MFE -20.26
Energy contribution -20.82
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.39
Structure conservation index 0.83
SVM decision value 1.92
SVM RNA-class probability 0.982626
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7227971 115 - 23771897
CCACGGGGACCACACAGAUGAAAGGGUCGCUCGCCCUUUCAG----UUUCCUUCUUUUUAAAUU-UUUUUUUGUUUUCUCCUAAGGUUCCUUGUCUCCCAAACUCCCCGAACCGCGCACC
...((((((......((((((((((((.....))))))))..----...((((......((((.-.......))))......))))......)))).......))))))........... ( -26.92)
>DroSec_CAF1 9701 116 - 1
CCACGGGGACCACACAGAUGAAAGGGUCGCUCGCCCUUUCAG----UUUUCUUCUCUUAGUUUUUUAUUUUUGUUUUCUCCUAAGGUUCCUUGUCUCCCAAACUCCCCGAACCGCACACC
...((((((......((((((((((((.....))))))))..----........((((((......((....))......))))))......)))).......))))))........... ( -26.92)
>DroSim_CAF1 9614 116 - 1
CCACGGGGACCACACAGAUGAAAGGGUCGCUCGCCCUUUCAG----UUUUCUUCUUUUAAUUUUUUUUUUUUGUUUUCUCCUAAGGUUCCUUGUCUCCCAAACUCCCCGAACCGCACACC
...((((((.........(((((((((.....))))))))).----..........................((((.....((((....))))......))))))))))........... ( -26.40)
>DroEre_CAF1 9742 102 - 1
CCAUAGGGACCACACAGAUGAAAGGGUC----GCCCUUUCUG----UUUUGCCCCU---------UUUUUCUGUUUUUUCUUAAGGUUUC-UGUCUCUCAAGCUCCCCGAACCGCACACC
..((((..(((..(((((.(((((((..----((........----....))))))---------))).)))))((......)))))..)-))).......((..........))..... ( -21.20)
>DroYak_CAF1 10682 103 - 1
CCAUAGGGACCACACAGAUGAAAGGGUC----GCCCUUUCUGCUCUUUUUUCCCCU---------UUUUU---UUUUUCCUUAAGGUUUC-UGUCUCCCAAACUCCCCGAACCGCACACC
.....((((....(((((.(((((((..----.))))))).............(((---------(....---.........))))..))-))).))))..................... ( -20.32)
>consensus
CCACGGGGACCACACAGAUGAAAGGGUCGCUCGCCCUUUCAG____UUUUCUUCUUUU____UU_UUUUUUUGUUUUCUCCUAAGGUUCCUUGUCUCCCAAACUCCCCGAACCGCACACC
...((((((......((((((((((((.....))))))))..........................................(((....))))))).......))))))........... (-20.26 = -20.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:24 2006