Locus 2607

Sequence ID 3L_DroMel_CAF1
Location 7,221,856 – 7,221,949
Length 93
Max. P 0.835016
window4080

overview

Window 0

Location 7,221,856 – 7,221,949
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -35.53
Consensus MFE -18.75
Energy contribution -20.11
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.53
SVM decision value 0.73
SVM RNA-class probability 0.835016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7221856 93 - 23771897
GCCAGGGCAGCAGCGUAAAUGCCAAUGCAAUGGUGCUGUUCGGAGC------------CGAGCAGCAGGGUCAACAGCAUCAGGAGCGCCAGUCGCUGAUCACCA
((((..(((...(((....)))...)))..))))((((((((....------------))))))))..(((...((((..(.((....)).)..))))...))). ( -36.20)
>DroVir_CAF1 4381 96 - 1
GCCAGGGCAGCAGCGCCAAUGCCAAUUCCAUGGUGCUGUUCGGCGGCAGCGCUGUUAACGAGCA------GCAACAGCAGCUGGAAAACC---UGCUGCUUAACA
....(((((((((.((....))...(((((.(.(((((((..((....))((((((....))))------))))))))).))))))...)---)))))))).... ( -40.20)
>DroGri_CAF1 4139 102 - 1
GCCAGGGCAGCAGCGCCAAUGCCAAUUCCAUGGUGCUGUUCGGCGGCAACGCAGCUAACGAGCAGCAGCAGCAACAGCAGCUCGAAAAUC---UGCUGCUCAACA
....(((((((((.......((........((.(((((((((..(((......)))..))))))))).))((....)).))........)---)))))))).... ( -41.76)
>DroSim_CAF1 3525 93 - 1
GCCAGGGCAGCAGCGUAAAUGCCAAUGCAAUGGUGCUGUUCGGCGC------------CGAGCAGCAUAGUCAACAGCAUCAGGAGCGCCAGUCACUGAUCACCA
((((..(((...(((....)))...)))..))))((((((((....------------))))))))..........(.(((((..((....))..)))))).... ( -33.80)
>DroEre_CAF1 3530 93 - 1
GCCAAGGCAGCAGCGCCAAUGCCAAUGCAAUAGUGCUGUUCGGCGC------------CGAGCAGCAAAGUCAACAGCAUCAGGAGCGCCAGUCGCUGAUCACCA
((....))..((((((...((((.((((.....(((((((((....------------)))))))))..(....).))))...).)))...).)))))....... ( -30.10)
>DroYak_CAF1 3536 93 - 1
GCCAAGGCAGCAGCGCCAAUGCCAAUGCAAUGGUGCUCUUCGGCGC------------CGAGCAACAAAGUCAGCAGCAUCAGGAGCGCCACUCGCUGAUCACCA
((....))..(((((....(((....))).((((((((((..((((------------.((.(......))).)).))...))))))))))..)))))....... ( -31.10)
>consensus
GCCAGGGCAGCAGCGCCAAUGCCAAUGCAAUGGUGCUGUUCGGCGC____________CGAGCAGCAAAGUCAACAGCAUCAGGAGCGCCAGUCGCUGAUCACCA
((((..(((...(((....)))...)))..))))((((((((................))))))))........((((....((....))....))))....... (-18.75 = -20.11 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:19 2006