Locus 2605

Sequence ID 3L_DroMel_CAF1
Location 7,218,711 – 7,218,805
Length 94
Max. P 0.631929
window4076 window4077

overview

Window 6

Location 7,218,711 – 7,218,805
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 93.62
Mean single sequence MFE -17.73
Consensus MFE -15.07
Energy contribution -15.63
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.85
SVM decision value 0.20
SVM RNA-class probability 0.631929
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7218711 94 + 23771897
GACCGUAAAGAAGAAGAAUAAUAUUCAGAAAGAAGUUCAUCAAAGGAAUUCACAAAGGAGAAGCAUUCAAUGCACUCCCAAAAAACGUGGUCGA
((((((......(((........))).....(((.(((......))).)))))...((((..((((...)))).))))..........)))).. ( -16.80)
>DroSec_CAF1 402 94 + 1
GACCGAAAAGAAGAAAUAUAAUAUUCAGAAAGGAGUUCAUCCAAGGAACUCACAAAGGAAGAACAUUCAAUGCACUCCCAAAAAACGUGGUCGA
(((((...........................((((((.......)))))).....((.((..(((...)))..)).))........))))).. ( -16.10)
>DroSim_CAF1 387 94 + 1
GACCGAAAAGAAGAAAUAUAAUAUUCAGAAAGGAGUUCAUCCAAGGAACUCACAAAGGAAGAGCAUUCAAUGCACUCCCAAAAAACGUGGUCGA
(((((...........................((((((.......)))))).....((.((.((((...)))).)).))........))))).. ( -20.30)
>consensus
GACCGAAAAGAAGAAAUAUAAUAUUCAGAAAGGAGUUCAUCCAAGGAACUCACAAAGGAAGAGCAUUCAAUGCACUCCCAAAAAACGUGGUCGA
(((((...........................((((((.......)))))).....((.((.((((...)))).)).))........))))).. (-15.07 = -15.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 7,218,711 – 7,218,805
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 93.62
Mean single sequence MFE -19.71
Consensus MFE -16.89
Energy contribution -16.90
Covariance contribution 0.01
Combinations/Pair 1.16
Mean z-score -1.89
Structure conservation index 0.86
SVM decision value 0.02
SVM RNA-class probability 0.544556
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7218711 94 - 23771897
UCGACCACGUUUUUUGGGAGUGCAUUGAAUGCUUCUCCUUUGUGAAUUCCUUUGAUGAACUUCUUUCUGAAUAUUAUUCUUCUUCUUUACGGUC
..((((.........(((((.((((...))))..)))))..(((((.......(((((..(((.....)))..))))).......))))))))) ( -18.64)
>DroSec_CAF1 402 94 - 1
UCGACCACGUUUUUUGGGAGUGCAUUGAAUGUUCUUCCUUUGUGAGUUCCUUGGAUGAACUCCUUUCUGAAUAUUAUAUUUCUUCUUUUCGGUC
..((((.........(((((.((((...)))).))))).....((((((.......))))))............................)))) ( -19.10)
>DroSim_CAF1 387 94 - 1
UCGACCACGUUUUUUGGGAGUGCAUUGAAUGCUCUUCCUUUGUGAGUUCCUUGGAUGAACUCCUUUCUGAAUAUUAUAUUUCUUCUUUUCGGUC
..((((.........(((((.((((...)))).))))).....((((((.......))))))............................)))) ( -21.40)
>consensus
UCGACCACGUUUUUUGGGAGUGCAUUGAAUGCUCUUCCUUUGUGAGUUCCUUGGAUGAACUCCUUUCUGAAUAUUAUAUUUCUUCUUUUCGGUC
..((((.........(((((.((((...)))).))))).....((((((.......))))))............................)))) (-16.89 = -16.90 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:17 2006