Locus 2604

Sequence ID 3L_DroMel_CAF1
Location 7,217,681 – 7,217,792
Length 111
Max. P 0.574978
window4075

overview

Window 5

Location 7,217,681 – 7,217,792
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.05
Mean single sequence MFE -25.75
Consensus MFE -15.43
Energy contribution -14.60
Covariance contribution -0.83
Combinations/Pair 1.50
Mean z-score -1.29
Structure conservation index 0.60
SVM decision value 0.08
SVM RNA-class probability 0.574978
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7217681 111 - 23771897
-----AUAAAAAUGUU--CACUUAAAAUCCAAUGCCACC-AUGAAU-UUAGCUUGCGGGAAGCCUGCAUAGGAGUUUUGCCUCCGCCGCCAAGGCCGCAAAAGCAAAGCCCGUCAAAACC
-----...........--.....................-.(((..-......((((((...))))))..((.(((((((....((.((....)).))....))))))))).)))..... ( -24.40)
>DroSec_CAF1 2127 109 - 1
-----AUGAAAA--UU--CACUUAAAAUCUAAUGCCACG-AUGAUU-UUAGCUUGCGGGAAGCCUACAUAGGAGUUUUGCCUCCGCCGCCAAGGUCGCAAAAGCAAAACCCGUCAAAACC
-----.......--..--...((((((((..........-..))))-)))).(((((((...(((....)))..((((((..((........))..))))))......)))).))).... ( -22.80)
>DroSim_CAF1 1365 111 - 1
-----AUGAAAAUGUU--CACUUAAAAUCUAAUGCCACC-AUGAUU-UUAGCUUGCGGGAAGCCUGCAUAGGAGUUUUGCCUCCGCCGCCAAGGCCGCAAAAGCAAAACCCGUCAAAACC
-----.(((.......--...((((((((..........-..))))-))))..((((((...))))))..((.(((((((....((.((....)).))....))))))))).)))..... ( -27.50)
>DroEre_CAF1 1995 110 - 1
-----AUAAAAAU-UU--CAAUUAACAUCCAAUGCAACC-GUAAUU-UUAGCUUGCGGGAACACUGCAAAGGAGUUUUGCCUCCGCCGCCAAGGCCGCAAAAGCAAAGCCAGUCAAAACC
-----........-..--.........(((..((((.((-((((..-.....))))))......))))..)))(((((((....((.((....)).))....)))))))........... ( -24.90)
>DroAna_CAF1 871 112 - 1
------UAUAAAU-UUAUUACAAAGAAUUAAAAGUAAUCUGAUAUU-UUAGGUUGCGGGCAACAUGAGGAGGGGAUUCGCCUCCGCCGCAAAGGUGGCUAAAAGCCAACCCGCCAAAACU
------.......-...................(((((((((....-))))))))).(((.......(((((.(...).)))))(((((....))))).............)))...... ( -31.80)
>DroPer_CAF1 2346 116 - 1
AAUUUAUGAAUUAAUU--UA-UUAAACUUUAAACACAUC-GUGUUUCUUAGCUUGUGGGAAAUCUGCAUAAAUGUUUCGCCACGGCGGCCAACGUGAAAAAAUCGGCGCCCAUAAAAAGC
..((((((........--..-.....((..((((((...-))))))...))...(((((((((.(......).))))).))))((((.((....(....)....)))))))))))).... ( -23.10)
>consensus
_____AUAAAAAU_UU__CACUUAAAAUCUAAUGCCACC_AUGAUU_UUAGCUUGCGGGAAGCCUGCAUAGGAGUUUUGCCUCCGCCGCCAAGGCCGCAAAAGCAAAACCCGUCAAAACC
......................................................(((((...........((((......))))(((.....))).............)))))....... (-15.43 = -14.60 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:15 2006