| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 727,239 – 727,337 |
| Length | 98 |
| Max. P | 0.959804 |
| Location | 727,239 – 727,337 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.91 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -29.94 |
| Energy contribution | -29.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.959804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 727239 98 + 23771897 A--A--UGAUAUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUACAAAG .--.--........(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ ( -30.30) >DroSec_CAF1 82738 97 + 1 A--A---AAUCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGUGAAG .--.---........((((((((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...)))))))...)))))... ( -31.70) >DroSim_CAF1 84247 96 + 1 ---A---AAUUUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUUUGCUUGCAUGUGAAG ---.---........(((((.(((.((((((((((((.....))))...((((((.....))))))..(((.......)))..))))))))))))))))... ( -31.50) >DroEre_CAF1 87216 100 + 1 A--AAAGUAUCUCAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCGUCGAAAG .--........((.((.((.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))).)).))... ( -30.90) >DroYak_CAF1 88428 102 + 1 AGGAAAACACCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGAAAAU (((......)))..(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ ( -31.60) >consensus A__A___AAUCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGUAAAG ..............(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ (-29.94 = -29.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006