Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 727,239 – 727,337 |
Length | 98 |
Max. P | 0.959804 |
Location | 727,239 – 727,337 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -29.94 |
Energy contribution | -29.78 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.96 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 727239 98 + 23771897 A--A--UGAUAUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUACAAAG .--.--........(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ ( -30.30) >DroSec_CAF1 82738 97 + 1 A--A---AAUCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGUGAAG .--.---........((((((((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...)))))))...)))))... ( -31.70) >DroSim_CAF1 84247 96 + 1 ---A---AAUUUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUUUGCUUGCAUGUGAAG ---.---........(((((.(((.((((((((((((.....))))...((((((.....))))))..(((.......)))..))))))))))))))))... ( -31.50) >DroEre_CAF1 87216 100 + 1 A--AAAGUAUCUCAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCGUCGAAAG .--........((.((.((.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))).)).))... ( -30.90) >DroYak_CAF1 88428 102 + 1 AGGAAAACACCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGAAAAU (((......)))..(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ ( -31.60) >consensus A__A___AAUCUAAGCACAUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGCAUGUAAAG ..............(((...(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))))........ (-29.94 = -29.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006