Locus 26

Sequence ID 3L_DroMel_CAF1
Location 106,581 – 106,695
Length 114
Max. P 0.609394
window32

overview

Window 2

Location 106,581 – 106,695
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.28
Mean single sequence MFE -31.70
Consensus MFE -22.70
Energy contribution -22.90
Covariance contribution 0.20
Combinations/Pair 1.13
Mean z-score -1.71
Structure conservation index 0.72
SVM decision value 0.15
SVM RNA-class probability 0.609394
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 106581 114 + 23771897
GUAUAUGUAUAUAUACCAAUCGGGUAAAUACCCUUGUAUAU------GUAUACUGCCCCACAUCUGUGCGUCGUCGGUAUACAAACCACAGAAAGUACACAGGACUCUGGGCGGUUGAGU
.....(((((((((((.....((((....))))..))))))------)))))((((((....((((((..(..(((((......)))...))..)..)))))).....))))))...... ( -33.60)
>DroSec_CAF1 42575 105 + 1
---------UUUAUACAAAUCGGGUAUAUAUCCUUGUGUAU------GUAUACUGCCCCACUUCUGUGCGUCGUCGGUAUACAUACCACAGAAUGUACCCAGGACUCUGGGCGGUUGAGU
---------............((((((((.((..((.((((------(((((((((.((((....))).)..).))))))))))))))..))))))))))...((((.........)))) ( -33.50)
>DroSim_CAF1 48023 105 + 1
---------UUUAUACAAAUCGGGUAUAUAUCCUUGUGUAU------GUAUACUGCCCCACUUCUGUGCGUCGUCGGUAUACAAACCACAGAAUGUACCCAGGACUCUGGGCGGUUGAGU
---------............((((((((.((..((.((.(------(((((((((.((((....))).)..).))))))))).))))..))))))))))...((((.........)))) ( -29.40)
>DroEre_CAF1 62540 110 + 1
---------UAUAUACAAAUCGGGUAUAUAUCGGUGUAUAUACUCGUAUAUACUGUCCCACAUCUGUGCGUCGUC-GUAUACAAGCCACAGAAUGUACACAGGACUCCGGGCGGUUCAGU
---------(((((((.....((((((((((....)))))))))))))))))((((((.(((((((((.((....-........))))))).)))).....((...))))))))...... ( -28.40)
>DroYak_CAF1 59716 111 + 1
---------CAUAUACAAAUCGGGUAUAUAUCGGUGUAUAUACUCGUAUAUACUGCCCCACAUCUGUGCGUCGUCGGUAUACAAGCCACAGAAUGUACACAGGACUCCGGGCGGUGGAGU
---------...........(((((((((((....)))))))))))....((((((((....((((((..((((.(((......))))).)).....)))))).....)))))))).... ( -33.60)
>consensus
_________UAUAUACAAAUCGGGUAUAUAUCCUUGUAUAU______GUAUACUGCCCCACAUCUGUGCGUCGUCGGUAUACAAACCACAGAAUGUACACAGGACUCUGGGCGGUUGAGU
...........((((((....((((....)))).))))))...........(((((((....((((((((((...(((......)))...).))))))...)))....)))))))..... (-22.70 = -22.90 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006