Locus 2599

Sequence ID 3L_DroMel_CAF1
Location 7,209,675 – 7,209,772
Length 97
Max. P 0.563048
window4066

overview

Window 6

Location 7,209,675 – 7,209,772
Length 97
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 89.41
Mean single sequence MFE -36.70
Consensus MFE -33.30
Energy contribution -33.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.91
SVM decision value 0.06
SVM RNA-class probability 0.563048
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7209675 97 + 23771897
GCGGAAAUGCACGGAAGCAUGUCUGAG---------------GGGGCAGGAAACUGUGUUGACUCGGCUCCAGGAUGAGCAUGUGUGCACAUCGAUGCAGGCAACCCACCAU
.((((.((((......)))).)))).(---------------((.((((....)))).........((((......)))).(((.((((......)))).))).)))..... ( -33.50)
>DroEre_CAF1 23051 97 + 1
GCGGAAAUGCACGGAAGCAUGUCUGAG--------------GGGGGCAGGAAACUGUGUUGACUCGGCUCCAGGAUGAGCAUGUGUGCACAUGGAUGCAGGCAACCCAC-AU
.((((.((((......)))).)))).(--------------((..((((....)))).........((((......)))).(((.((((......)))).))).)))..-.. ( -33.50)
>DroYak_CAF1 20364 111 + 1
GCGGAAAUGCACGGAAGCAUGUCUGAGCGGGGGGAGGGGGUGGGGGCAGGAAACUGUGUUGACUCGGCUCCAGGAUGAGCAUGUGUGCACAUCGAUGCAGGCAACCCAC-AU
.((((.((((......)))).)))).(.(((.((((.((((.((.((((....)))).)).))))..))))..........(((.((((......)))).))).))).)-.. ( -43.10)
>consensus
GCGGAAAUGCACGGAAGCAUGUCUGAG______________GGGGGCAGGAAACUGUGUUGACUCGGCUCCAGGAUGAGCAUGUGUGCACAUCGAUGCAGGCAACCCAC_AU
.((((.((((......)))).)))).................(((((((....)))).........((((......)))).(((.((((......)))).))).)))..... (-33.30 = -33.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:06 2006