Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,205,599 – 7,205,797 |
Length | 198 |
Max. P | 0.833617 |
Location | 7,205,599 – 7,205,717 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -24.47 |
Energy contribution | -25.96 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.55 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7205599 118 + 23771897 CUGCCCUUUGAACUUCACAACCGGGCCACAUUUACACAUUUACAUGGCCA--UCGCGAUAACCAUCUCAACGGCGUUUCUCACCUGAGAAAUGGCCCCGGAUCCGGUGGGCUCCUUUGCG ..((((..((.....))..((((((((................((.((..--..)).))............((((((((((....))))))).)))..)).))))))))))......... ( -32.20) >DroSec_CAF1 18892 118 + 1 CUGCCCUUUGAACUUCGCAACCGGGCCACAUUUACACAUUUACAUGGCCA--UCGUGAUACCCAUCUCAACGGCGUUUCUCACCUGAGAAAUGACCCCGGAUCCGGCGGUCUCCUUUGCG ...............(((((((((((((................))))).--..(.(((....))).)..))).(((((((....)))))))(((((((....))).))))....))))) ( -33.69) >DroEre_CAF1 19315 110 + 1 CUGCCCUUUGAACUUCGCACCCGGCCCACAU--------UUACAUGGGCA--ACGCGAUUCCCAUCUCCUCGGCGUUCCUCACCUGAGAAAUGGCCCCGGAUACCGGGGUCUCCUUUUCG ..(((....((...((((.....(((((...--------.....))))).--..))))......)).....)))...........(((((..((((((((...))))))))...))))). ( -35.10) >DroYak_CAF1 16531 111 + 1 CUGCCCUUUGAACUUCGCACCCGGCCGACAU--------UUACAUGGGCACCACGCGAUACCCAUCUCCACGGCGUUCCUCACCUGAGAAAUGGCCCCGGAU-CCGGGGUCUCCUUUGCG .(((((..((((..((((.....).)))..)--------)))...)))))...(((((......((((...((.(.....).)).))))...(((((((...-.)))))))....))))) ( -35.00) >consensus CUGCCCUUUGAACUUCGCAACCGGCCCACAU________UUACAUGGCCA__ACGCGAUACCCAUCUCAACGGCGUUCCUCACCUGAGAAAUGGCCCCGGAUCCCGGGGUCUCCUUUGCG ..(((....((...((((.....(((((................))))).....))))......)).....)))(((((((....)))))))((((((((...))))))))......... (-24.47 = -25.96 + 1.50)
Location | 7,205,599 – 7,205,717 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -43.92 |
Consensus MFE | -32.79 |
Energy contribution | -32.60 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.15 |
Mean z-score | -1.94 |
Structure conservation index | 0.75 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7205599 118 - 23771897 CGCAAAGGAGCCCACCGGAUCCGGGGCCAUUUCUCAGGUGAGAAACGCCGUUGAGAUGGUUAUCGCGA--UGGCCAUGUAAAUGUGUAAAUGUGGCCCGGUUGUGAAGUUCAAAGGGCAG .........((((.(((....)))(((((((((...((((.....))))...))))))))).((((((--(((((((((..........))))))))..)))))))........)))).. ( -46.80) >DroSec_CAF1 18892 118 - 1 CGCAAAGGAGACCGCCGGAUCCGGGGUCAUUUCUCAGGUGAGAAACGCCGUUGAGAUGGGUAUCACGA--UGGCCAUGUAAAUGUGUAAAUGUGGCCCGGUUGCGAAGUUCAAAGGGCAG (((((....((((.(((....)))))))...(((((((((.....))))..)))))(((((..((((.--..(((((....))).))...))))))))).)))))..(((.....))).. ( -39.60) >DroEre_CAF1 19315 110 - 1 CGAAAAGGAGACCCCGGUAUCCGGGGCCAUUUCUCAGGUGAGGAACGCCGAGGAGAUGGGAAUCGCGU--UGCCCAUGUAA--------AUGUGGGCCGGGUGCGAAGUUCAAAGGGCAG ...........((((((...))))))((((((((..((((.....))))..))))))))...(((((.--.((((((....--------..))))))....))))).(((.....))).. ( -43.60) >DroYak_CAF1 16531 111 - 1 CGCAAAGGAGACCCCGG-AUCCGGGGCCAUUUCUCAGGUGAGGAACGCCGUGGAGAUGGGUAUCGCGUGGUGCCCAUGUAA--------AUGUCGGCCGGGUGCGAAGUUCAAAGGGCAG ((((..(....)(((((-.((((.(((..((((((....)))))).))).)))).(((((((((....)))))))))....--------.......)))))))))..(((.....))).. ( -45.70) >consensus CGCAAAGGAGACCCCCGGAUCCGGGGCCAUUUCUCAGGUGAGAAACGCCGUGGAGAUGGGUAUCGCGA__UGCCCAUGUAA________AUGUGGCCCGGGUGCGAAGUUCAAAGGGCAG ......(((.((....)).)))...(((...((((.((((.....))))...))))((((..((((((...((((((((..........))))))))...))))))..))))...))).. (-32.79 = -32.60 + -0.19)
Location | 7,205,677 – 7,205,797 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.46 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -31.30 |
Energy contribution | -32.93 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.84 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7205677 120 + 23771897 CACCUGAGAAAUGGCCCCGGAUCCGGUGGGCUCCUUUGCGCUCCGGUUACGUGGGGCUGUGUGGGUCCACAAUUUAUCAUGACACUAAUGAGCGUGAAAUAGGACAAGGUUUAUUAAAUU .((((.......(.(((((....))).)).)(((((..(((((.(((..(((((.....((((....)))).....)))))..)))...)))))..)...))))..)))).......... ( -37.00) >DroSec_CAF1 18970 120 + 1 CACCUGAGAAAUGACCCCGGAUCCGGCGGUCUCCUUUGCGCUCCGGUUACGUGGGGCUGUGUGGCUCCACAAUUUAUCAUGACACUAAUGAGCGUGAAAUAGGACAAGGUUUAUUAAAUU .((((.......(((((((....))).))))(((((..(((((.(....)((((((((....))))))))...................)))))..)...))))..)))).......... ( -41.70) >DroEre_CAF1 19385 116 + 1 CACCUGAGAAAUGGCCCCGGAUACCGGGGUCUCCUUUUCGCUCCGGUUACGUGA----CUGUGGCUCCACAAUUUAUCAUGACACUAAUGAGCAUGAAAUAGGACAAGGUUUAUUAAAUU .((((.......((((((((...))))))))((((((((((((.(((..(((((----.((((....)))).....)))))..)))...))))..)))).))))..)))).......... ( -36.60) >DroYak_CAF1 16603 115 + 1 CACCUGAGAAAUGGCCCCGGAU-CCGGGGUCUCCUUUGCGCUCCGGUUACGUGA----CUGUGGCUCCACAAUUUAUCAUGACACUAAUGAGCAUGAAAUAGGACAAGGUUUAUUAAAUU .((((.......(((((((...-.)))))))((((.(((((..(((((....))----)))..))...........((((.......)))))))......))))..)))).......... ( -34.30) >consensus CACCUGAGAAAUGGCCCCGGAUCCCGGGGUCUCCUUUGCGCUCCGGUUACGUGA____CUGUGGCUCCACAAUUUAUCAUGACACUAAUGAGCAUGAAAUAGGACAAGGUUUAUUAAAUU .((((.......((((((((...))))))))((((((((((((.(((..(((((.....((((....)))).....)))))..)))...))))))))...))))..)))).......... (-31.30 = -32.93 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:00 2006