Locus 2595

Sequence ID 3L_DroMel_CAF1
Location 7,205,463 – 7,205,566
Length 103
Max. P 0.896446
window4055 window4056

overview

Window 5

Location 7,205,463 – 7,205,566
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 94.50
Mean single sequence MFE -30.23
Consensus MFE -24.21
Energy contribution -25.43
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -2.89
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.780325
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7205463 103 + 23771897
CAGCACAUUAAAUGGCCAUAAAAUGGCGAACAAAACUGGCAAAUCAAAGGCAACUUGUCCGCAUCAGCGGCGAACUUUUCUAAUUUAUGGCCAUUUCUGUGCG
..(((((..(((((((((((((.(((.(((................(((....)))(.((((....)))))....))).))).))))))))))))).))))). ( -36.40)
>DroSec_CAF1 18756 103 + 1
CAGCACAUUAAACGGCCAUAAAAUGGCGAACAAAACUGGCAAAUCAAAGGCAACUUGUCCGCAUCAGCGGCGAACUUUUCUAAUUUAUGGCCAUUUCUGUGUG
..(((((..(((.(((((((((.(((.(((................(((....)))(.((((....)))))....))).))).))))))))).))).))))). ( -29.80)
>DroEre_CAF1 19182 99 + 1
CGGCACAUUAAACGGCCAUAAAAUGGCGAACAAAACUGGCAAAUCAAAGGCAACUUGUCCGCAUCAGGGGCGAACUUUUCUAAUUUAUGGCCAUUUGUG----
...((((......(((((((((.(((.(((................(((....)))((((.......))))....))).))).)))))))))...))))---- ( -24.50)
>consensus
CAGCACAUUAAACGGCCAUAAAAUGGCGAACAAAACUGGCAAAUCAAAGGCAACUUGUCCGCAUCAGCGGCGAACUUUUCUAAUUUAUGGCCAUUUCUGUG_G
..(((((..(((.(((((((((.(((.(((................(((....)))(.((((....)))))....))).))).))))))))).))).))))). (-24.21 = -25.43 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 7,205,463 – 7,205,566
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -32.03
Consensus MFE -28.15
Energy contribution -28.60
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.59
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.896446
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7205463 103 - 23771897
CGCACAGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGCGGACAAGUUGCCUUUGAUUUGCCAGUUUUGUUCGCCAUUUUAUGGCCAUUUAAUGUGCUG
.(((((.(((((((((((((...(((.((..(.((((....)))).((((((......))))))...)..)).))).....)))))))))))))..))))).. ( -36.00)
>DroSec_CAF1 18756 103 - 1
CACACAGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGCGGACAAGUUGCCUUUGAUUUGCCAGUUUUGUUCGCCAUUUUAUGGCCGUUUAAUGUGCUG
((((...(((((((((((((...(((.((..(.((((....)))).((((((......))))))...)..)).))).....)))))))))))))..))))... ( -31.70)
>DroEre_CAF1 19182 99 - 1
----CACAAAUGGCCAUAAAUUAGAAAAGUUCGCCCCUGAUGCGGACAAGUUGCCUUUGAUUUGCCAGUUUUGUUCGCCAUUUUAUGGCCGUUUAAUGUGCCG
----((((((((((((((((((((............)))))(((((((((..((.........))....)))))))))....)))))))))))...))))... ( -28.40)
>consensus
C_CACAGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGCGGACAAGUUGCCUUUGAUUUGCCAGUUUUGUUCGCCAUUUUAUGGCCGUUUAAUGUGCUG
..((((.(((((((((((((((((............)))))(((((((((..((.........))....)))))))))....))))))))))))..))))... (-28.15 = -28.60 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:57 2006