Locus 2591

Sequence ID 3L_DroMel_CAF1
Location 7,202,182 – 7,202,301
Length 119
Max. P 0.954682
window4038

overview

Window 8

Location 7,202,182 – 7,202,301
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.40
Mean single sequence MFE -45.00
Consensus MFE -37.33
Energy contribution -37.58
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -2.29
Structure conservation index 0.83
SVM decision value 1.45
SVM RNA-class probability 0.954682
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7202182 119 + 23771897
GCCCCCCCAUUCC-GGGGUCACAGUUCAUGCCCGGGCCAACUCAUCCAUGGGCACGAGACUGAGACUACUGCCUGCAAGCUGGCAAACUUCGCCAGCCAGGAUCCGAGCUGUUACCUCGU
............(-(((((.(((((((.((((((((.........)).)))))).((..(((.......((....)).((((((.......)))))))))..)).))))))).)))))). ( -45.30)
>DroSec_CAF1 15642 113 + 1
GCCC-CCCAUUCC-GGGGUCACAGUUCAUGCCCGGGCCAACUCAUCCAUGGGCA-----CUGAGACUACGGCCUGCAAGCUGGCAAACUUCGCCAGCCAGGAUCCGAGCUGUUACCUCGU
....-.......(-(((((.(((((((.((((((((.........)).))))))-----..........((((((...((((((.......))))))))))..))))))))).)))))). ( -46.20)
>DroEre_CAF1 16050 110 + 1
C--A-CCCGGUCC-GGGGUCACAGUUCAUGCCCGGGCCAACUCAUCCAUGGGCAC------GAGACUAUGGGCUGCAAGCUGGCAAACUUCGCCAGCCAGGAUCCGGGCUCUUACCUCGU
.--.-((((((((-(.((((.((.(((.((((((((.........)).)))))).------)))....)))))).)..((((((.......))))))..))).)))))............ ( -44.80)
>DroYak_CAF1 13162 111 + 1
C--U-CCCAGUCUUGGGGUCACAGUUCAUGCCCGGGCCAACUCAUCCAUGGGCAC------GAGGCUAUGGGCUGCAAGCUGGCAAACUUCGCCAGCCAGGAUCCGGGCUCUUACCUCAU
.--.-........((((((...((.....(((((((((......(((((((.(..------..).)))))))......((((((.......))))))..)).))))))).)).)))))). ( -43.70)
>consensus
C__C_CCCAGUCC_GGGGUCACAGUUCAUGCCCGGGCCAACUCAUCCAUGGGCAC______GAGACUACGGCCUGCAAGCUGGCAAACUUCGCCAGCCAGGAUCCGAGCUCUUACCUCGU
..............(((((.(((((((.((((((((.........)).))))))..................(((...((((((.......))))))))).....))))))).))))).. (-37.33 = -37.58 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:40 2006