Locus 2590

Sequence ID 3L_DroMel_CAF1
Location 7,201,964 – 7,202,070
Length 106
Max. P 0.686546
window4037

overview

Window 7

Location 7,201,964 – 7,202,070
Length 106
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 80.65
Mean single sequence MFE -30.30
Consensus MFE -23.05
Energy contribution -23.30
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.76
SVM decision value 0.32
SVM RNA-class probability 0.686546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7201964 106 + 23771897
ACAAGGGGAAAGCACGAGUGUUUGGCACAUAAACACGAAGCCCCCCAAAUGCCAACAGGUUAGA-AGCCUGUGGAA-ACCCCUUCGGAAUGCCCCGCCACCCCG--UAAU---------
....((((.(((((....)))))(((..........((((..............((((((....-.))))))(...-.)..))))((......))))).)))).--....--------- ( -30.30)
>DroSec_CAF1 15405 117 + 1
ACAAGGGGAAAGCACGAGUGUUUGGCACAUAAACACGAAGCCCCCCGAAUGCCAACAGGUUAGA-AGCCUGAGGAA-ACCCCUUCGGAAUGCCCCACCACCCCCCUGAAUUUUCCUUUU
...(((((.........(((((((.....)))))))...((...(((((......(((((....-.))))).(...-.)...)))))...)).........)))))............. ( -30.20)
>DroEre_CAF1 15828 102 + 1
ACAAGGGGAAAGCACGAGUGUUUGGCACAUAAACACGAAGCC--CCGAAUGCCAACAGGUUAAAGAGCCUGAAGAA-ACCCCUUCGGG-------------CUUC-CAUUUUUCCUUUU
..((((((((((.....(((((((.....)))))))((((((--(..........((((((....))))))..(((-.....))))))-------------))))-..)))))))))). ( -34.50)
>DroYak_CAF1 12927 115 + 1
ACAAGGGGAAAGCACGAGUGUUUGGCACAUAAACACGAGGCC--CCGAAUGCCAACAGGUUAGA-AGCCAGAAGAAAACCCCUUCGGAAACCCCCCCCAAUCCCC-CAUUUUUCCUUUU
....(((((........(((((((.....)))))))..(((.--.(....(((....)))..).-.))).((((.......))))(....).........)))))-............. ( -26.20)
>consensus
ACAAGGGGAAAGCACGAGUGUUUGGCACAUAAACACGAAGCC__CCGAAUGCCAACAGGUUAGA_AGCCUGAAGAA_ACCCCUUCGGAAUGCCCC_CCACCCCCC_CAAUUUUCCUUUU
.(((((((...((....(((((((.....)))))))...))..............(((((......))))).......)))))).)................................. (-23.05 = -23.30 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:39 2006