Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 721,597 – 721,717 |
Length | 120 |
Max. P | 0.932051 |
Location | 721,597 – 721,717 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.17 |
Mean single sequence MFE | -42.62 |
Consensus MFE | -25.59 |
Energy contribution | -26.07 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.34 |
Mean z-score | -2.66 |
Structure conservation index | 0.60 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 721597 120 + 23771897 UUGGCCCUGAAGAAGACAUUCUGGAAGGGCGUCAUUUGCUUCAUCAGCGGCAGAAAGCUGAUCAGGUAGUUGUAGUCGGAGUCGCCCACAUGGAGGACACUCUUGCACCUGGCCAGAUCC ((((((....((((....))))((..(((((.(..((((((.((((((........)))))).))))))(((....))).).)))))....((((....))))....)).)))))).... ( -39.00) >DroVir_CAF1 94194 120 + 1 UUGGCGCGAAAGGCAACAUUCUGGAGCGGCGACAUUUGCUUCAUCAGCGGCAAGAAACUGAUGAGGAAAUUGUAGUCCGAGUCGCCCACGUGCAGGAUGUUCUUGCAGCGCGCCAAGUCC ((((((((..(((.(((((((((..((((((((.......(((((((..........)))))))(((........)))..))))))...)).))))))))))))....)))))))).... ( -49.60) >DroGri_CAF1 105334 120 + 1 UUGGCGCGAAAUGCAACAUUCUGCAGCGAUGACAUUUGCUUCAUCAUCGGCAAGAAACUGAUGAGAAAAUUGUAAUCCGAAUCGCCCACAUGCAGUAUAUUCUUGCAACGUGCCAAAUCC ((((((((...(((((....((((((((((.....(((((((.(((((((.......))))))))))....)))).....))))).....))))).......))))).)))))))).... ( -38.30) >DroWil_CAF1 70905 120 + 1 UUGGCGCGAAAGAAAACAUUUUGGAGUGGCGACAUUUGCUUCAUAAGUGGCAAAAAGCUGAUUAGAUAAUUGUAAUCAGAGUCACCCACAUGCAAUACAUUUUUGCAACGUGCCAAAUCU ((((((((.............(((.(((((....((((((........))))))...(((((((.(....).))))))).))))))))..(((((.......))))).)))))))).... ( -40.60) >DroMoj_CAF1 91721 120 + 1 UUGGCCCGAAAGGUAAUGUUCUGCAACGGCGACAUUUGCUUCAUCAGCGGCAAAAAGCUGAUGAGGAAAUUGUAAUCGGAGUCGCCCACGUGCAGGAUGUUCUUGCAGCGCGCCAAAUCC (((((.((..(((.(((((((((((..((((((.....((((((((((........))))))))))...(((....))).))))))....))))))))))))))....)).))))).... ( -50.60) >DroAna_CAF1 81914 120 + 1 UUGGCCCGAAAGUAGACGUUUUGGAUGGGCGUCAUCUGCUUCAUAAGGGGCAGGAAGCUGAUCAGGUAGUUGUAGUCGGAAUCGCCCACAUGGAGUACGUUCUUGGACCUGGCCAGAUCC (((((((....)..((((((..(..(((((.....(((((((....)))))))((..(((((.(.(....).).)))))..)))))))..)..)..))))).........)))))).... ( -37.60) >consensus UUGGCCCGAAAGGAAACAUUCUGGAGCGGCGACAUUUGCUUCAUCAGCGGCAAAAAGCUGAUGAGGAAAUUGUAAUCGGAGUCGCCCACAUGCAGGACAUUCUUGCAACGCGCCAAAUCC ((((((((...................((((((.((((((........))))))...(((((.(.(....).).))))).))))))....(((((.......))))).)))))))).... (-25.59 = -26.07 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:41 2006