Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,199,754 – 7,199,872 |
Length | 118 |
Max. P | 0.679382 |
Location | 7,199,754 – 7,199,872 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -32.37 |
Energy contribution | -32.37 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.99 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7199754 118 - 23771897 --AGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACGGC --.((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...(((((((........))))).))........)))) ( -32.60) >DroEre_CAF1 13649 120 - 1 GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA ..(((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).)))))........... ( -32.50) >DroYak_CAF1 10786 120 - 1 GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA ..(((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).)))))........... ( -32.50) >consensus GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA ...((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).))))............ (-32.37 = -32.37 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:37 2006