Locus 2586

Sequence ID 3L_DroMel_CAF1
Location 7,199,203 – 7,199,315
Length 112
Max. P 0.924977
window4030

overview

Window 0

Location 7,199,203 – 7,199,315
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -27.34
Consensus MFE -24.03
Energy contribution -24.07
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.88
SVM decision value 1.17
SVM RNA-class probability 0.924977
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7199203 112 - 23771897
AGAGAAUUAUUGUGAUGAAAUAGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUCACUGGGGUGCACGAU--------AAUGCCAGCGAGGGGACUCCAAAGUAAUGAUGCAGAAAA
.........................(.(((((((.(((...((((((.....(.((((.((((.((.......--------.)).)))).)))).).))))))..)))))))))).)... ( -26.60)
>DroSec_CAF1 12746 112 - 1
AGAGAAUUAUUGUGAUGAAAUAGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUCACUGGGGUGCACGAU--------AAUGCCAGCGAGGGGACUCCAAAGUAAUGAUGCAGAAAA
.........................(.(((((((.(((...((((((.....(.((((.((((.((.......--------.)).)))).)))).).))))))..)))))))))).)... ( -26.60)
>DroSim_CAF1 4700 112 - 1
AGAGAAUUAUUGUGAUGAAAUAGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUCACUGGGGUGCACGAU--------AAUGCCAGCGAGGGGACUCCAAAGUAAUGAUGCAGAAAA
.........................(.(((((((.(((...((((((.....(.((((.((((.((.......--------.)).)))).)))).).))))))..)))))))))).)... ( -26.60)
>DroEre_CAF1 13078 112 - 1
AGAGAAUCAUUGUGAUGAAGUAGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUCACUGGGGUGCACGAU--------AAUGCCAGCGAGGGGACUCCAAAGUAAUGAUGCAGAAAA
......((((....)))).......(.(((((((.(((...((((((.....(.((((.((((.((.......--------.)).)))).)))).).))))))..)))))))))).)... ( -27.70)
>DroYak_CAF1 10194 120 - 1
AGAGAAUUAUUGUGAUGAAGCUGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUUACUGGGGUGCACGAUAGCACGGUAAUGCCAGCGAGGGGACUCCCAAGUAAUGAUGCAGAAAA
....(((((.(((((((......))).)))).)))))..............((((((((((.((((((......))))((.....))...(((....))))).))))).)))))...... ( -29.20)
>consensus
AGAGAAUUAUUGUGAUGAAAUAGCAUGUGCAUUAGUUAAAGUUGGGGGAAAGCAUUUCACUGGGGUGCACGAU________AAUGCCAGCGAGGGGACUCCAAAGUAAUGAUGCAGAAAA
.........................(.(((((((.(((...((((((.....(.((((.((((.((................)).)))).)))).).))))))..)))))))))).)... (-24.03 = -24.07 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:33 2006