Locus 2585

Sequence ID 3L_DroMel_CAF1
Location 7,197,387 – 7,197,500
Length 113
Max. P 0.952541
window4029

overview

Window 9

Location 7,197,387 – 7,197,500
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 95.90
Mean single sequence MFE -24.58
Consensus MFE -19.98
Energy contribution -19.98
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.81
SVM decision value 1.42
SVM RNA-class probability 0.952541
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7197387 113 - 23771897
CUUCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUUGCAUUGCAUAACACUGAAUUUAUCUUAUCGCCAUGCUAUUCUCAUGAGUCAGCAAAU
....(((((((...(((.((((((............)))))).(((((((....))))))))))......)))))))............((((((((....)))).))))... ( -25.70)
>DroSec_CAF1 10959 112 - 1
CUUCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUU-CAUUGCAUAACACUGAAUUUAUCUUAUCGCCAUGCCAUUCCCAUGAGUCAGCAAAU
.....(((((((((((((((((((............))))))...)))))).((((-((.((.....)).)))))).......................)))))))....... ( -22.10)
>DroSim_CAF1 2914 112 - 1
CUUCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUU-CAUUGCAUAACACUGAAUUUAUCUUAUCGCCAUGCCAUUCCCAUGAGUCAGCAAAU
.....(((((((((((((((((((............))))))...)))))).((((-((.((.....)).)))))).......................)))))))....... ( -22.10)
>DroEre_CAF1 11197 111 - 1
CUGCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUU-UAUUGCAUAACACUGAAAUUAUCUUAUCGCCAUCCCAUUC-CAUGAGUCUGCAAAU
.(((((((((((......((((((............))))))..(((((((.....-.)))))))................................-.)))))))))))... ( -28.70)
>DroYak_CAF1 8409 111 - 1
CUUCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUU-CAUUGCAUAGCACUGAAUUUAUCUUAUCACCAUCCCAUUC-CAUGAGUCAGCAAAU
.....(((((((((((((((((((............))))))...)))))).((((-((.(((...))).)))))).....................-.)))))))....... ( -24.30)
>consensus
CUUCAGAUUCAUAUUGCAGCUCAGUUUUUACGCCAUUUGAGCAAAUGCAGUCGAUU_CAUUGCAUAACACUGAAUUUAUCUUAUCGCCAUGCCAUUC_CAUGAGUCAGCAAAU
.....(((((((......((((((............))))))..(((((((.......)))))))..................................)))))))....... (-19.98 = -19.98 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:32 2006