Locus 2584

Sequence ID 3L_DroMel_CAF1
Location 7,197,209 – 7,197,318
Length 109
Max. P 0.693050
window4028

overview

Window 8

Location 7,197,209 – 7,197,318
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 93.58
Mean single sequence MFE -26.47
Consensus MFE -22.20
Energy contribution -22.76
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.84
SVM decision value 0.33
SVM RNA-class probability 0.693050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7197209 109 - 23771897
UUAUUGCUUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCAAAAUAUUGAUGGUGCUAUCUGAUUGGGUUAUCAACUGGGGCCAGGCUAAACCAAUUUGUACAGCUG
.....(((...((((....(((((((((((.....))))))..)))))..))))((((.....((((((.(((....(((....)))..))).)))))).))))))).. ( -24.70)
>DroSec_CAF1 10781 109 - 1
UUAUUGCGUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCAAAAUAUUGAUGGUGCUGUCUGAUUGGGUUAUCAACUGCGGCCAGGCUAAACCAAUUUGUAUAGCUG
...((((((((((((....(((((((((((.....))))))..)))))..)))))))).((.((((......)))))).))))...(((((.((......)).))))). ( -25.90)
>DroSim_CAF1 2736 109 - 1
UUAUUGCUUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCAAAAUAUUGAUGGUGCUAUCUGAUUGGGUUAUCAACUGGGUCCAGGCUAAACCAAUUUGUAUAGCUG
.........((((((....(((((((((((.....))))))..)))))..))))))((((((.((((((.(((....(((....)))..))).)))))).).))))).. ( -27.10)
>DroEre_CAF1 11018 109 - 1
UUAUUGCUUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCUAAAUAGUGAUGGUGCUAUCUGAUUGGCUUAUCAACUCGGGCCAGGCUAAAGCAAUUUGUAUAGCUG
.....(((...((...((((((((((((((.....)))(((((......((((((.((((......))))))))))....))))).)))..))))))))))...))).. ( -28.40)
>DroYak_CAF1 8231 109 - 1
UUAUUGCUUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCUAAAUAGUGAUGGUGCUAUCUGAUUGGAUUAUCAACUGGGGCCAGGCUAGAACAUUUGGCAUAGUUG
....((((...........(((((((((((.....)))))).....((((..((((.(((..((((......))))..))).)))).)))))))))...))))...... ( -26.24)
>consensus
UUAUUGCUUAUCAUUUAAUUGUUUGCCAUUAAAUUGAUGGCCAAAAUAUUGAUGGUGCUAUCUGAUUGGGUUAUCAACUGGGGCCAGGCUAAACCAAUUUGUAUAGCUG
.........((((((....(((((((((((.....))))))..)))))..))))))((((((..(((((.(((....(((....)))..))).)))))..).))))).. (-22.20 = -22.76 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:31 2006