Locus 2582

Sequence ID 3L_DroMel_CAF1
Location 7,195,802 – 7,195,922
Length 120
Max. P 0.998319
window4023

overview

Window 3

Location 7,195,802 – 7,195,922
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -25.88
Consensus MFE -23.68
Energy contribution -23.52
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.91
SVM decision value 3.07
SVM RNA-class probability 0.998319
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7195802 120 + 23771897
UUGCGUUUGCCUGGCAAUUUCUGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGCUCACCCAUUUCCU
..((((((((((((((....((((.......)))).))))).)))).)))......................((((..((....))..))))...))((((....))))........... ( -26.00)
>DroSec_CAF1 9381 120 + 1
UUGCGUUUGCCUGGCAAUUUCUGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGUUCACCCAUUUCCU
..((((((((((((((....((((.......)))).))))).)))).)))......................((((..((....))..))))...))((((....))))........... ( -23.60)
>DroSim_CAF1 1301 120 + 1
UUGCGUUUGCCUGGCAAUUUCUGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGCUCACCCAUUUCCU
..((((((((((((((....((((.......)))).))))).)))).)))......................((((..((....))..))))...))((((....))))........... ( -26.00)
>DroEre_CAF1 9385 120 + 1
UUGCGUUUGCCUGGCAAUUUCAGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGCUCAGCCACUUCCA
..(((.((((.((((.......)))).....)))).))).(((((.......................(((.((((..((....))..)))).))).((((....)))).)))))..... ( -28.10)
>DroYak_CAF1 6710 120 + 1
UUGCGUUUGCCUGGCAAUUUCAGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGCUCAGCCAUUUCCU
..(((.((((.((((.......)))).....)))).))).(((((.......................(((.((((..((....))..)))).))).((((....)))).)))))..... ( -25.70)
>consensus
UUGCGUUUGCCUGGCAAUUUCUGCCAUUUUCGCAGCUGCCGUGGCAUAACCUUCCCCAUAACCUCAUUCAAUUUCUUUUACAUUUAUUAGAAUUUGCGAGCAGUCGCUCACCCAUUUCCU
..(((.((((.((((.......))))...((((((.(((....)))..........................((((..((....))..)))).)))))))))).)))............. (-23.68 = -23.52 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:26 2006