Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,195,563 – 7,195,683 |
Length | 120 |
Max. P | 0.967986 |
Location | 7,195,563 – 7,195,683 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -34.32 |
Energy contribution | -34.00 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.97 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7195563 120 - 23771897 UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAAUGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -36.20) >DroSec_CAF1 9146 120 - 1 UUGGAUUUGGUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUUGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -33.10) >DroSim_CAF1 1068 120 - 1 UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -36.20) >DroEre_CAF1 9159 119 - 1 UUGGAUUUGAUGGCAGUCAGCAAAUUGGCA-ACGCACUGCGGAAUCGUGGUGCUGGUGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((.((((.((....(...-.)((((..((....))..)))))).))))..(((..(...)..))).)))((((((.....)))))).......)))))))(....).. ( -36.30) >DroYak_CAF1 6476 120 - 1 UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGGUGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((..(((((((.((.((....((((..((....))..))))...((....)))).))..))))))))))((((((.....)))))).......)))))))(....).. ( -35.40) >consensus UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC ...(((((((.(((..(((((((.((.((....((((..((....))..))))....(....).)).))..))))))))))((((((.....)))))).......)))))))(....).. (-34.32 = -34.00 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:25 2006