Locus 258

Sequence ID 3L_DroMel_CAF1
Location 720,458 – 720,561
Length 103
Max. P 0.737226
window387

overview

Window 7

Location 720,458 – 720,561
Length 103
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 86.48
Mean single sequence MFE -35.17
Consensus MFE -24.71
Energy contribution -24.90
Covariance contribution 0.19
Combinations/Pair 1.13
Mean z-score -1.87
Structure conservation index 0.70
SVM decision value 0.44
SVM RNA-class probability 0.737226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 720458 103 + 23771897
GCUGGGAGCGGGGCAGAGCAGAAUGCAGUGCAUUGAACGC--GCAGGCAGAGGGCCCAAUAAUCGUACUAAAAUAGUGUGCCAUGCAUC----GCAUGGCAUUCCGGAU
.((((((...((((...((.....)).((((.......))--)).........))))........(((((...)))))((((((((...----)))))))))))))).. ( -34.40)
>DroSec_CAF1 75820 103 + 1
GCUGGAAGCUGGGCAGAGCAGAAUGCAGUGCAUUGAACGC--GCAGGCAGAGGGCCCAAUAAUCGUACUAAAAUAGUGUGCCAUGCAUC----GCAUGGCAUUCCGGAU
.((((((..(((((...((.....)).((((.......))--)).........))))).......(((((...)))))((((((((...----)))))))))))))).. ( -35.70)
>DroSim_CAF1 76829 103 + 1
GCUGGAAGCUGGGCAGAGCAGAGUGCAGUGCAUUGAACGC--GCUGGCAGAGGGCCCAAUAAUCGCACUAAAAUAGUGUGCCAUGCAUC----GCAUGGCAUUCCGGAU
.((((((..(((((...((..(((((.((.......))))--))).)).....)))))......((((((...))))))(((((((...----))))))).)))))).. ( -40.70)
>DroYak_CAF1 81583 98 + 1
GCUGGAAGCGAUCCAGA---------AGUGCAUUGAACGCACGCGGGCAGAGGGCUCAAUAAUUGUACUAAAAUAGUG--CCAUGCAUCAUUGGCAUAGCAUUCCGGAU
.((((((((.((((((.---------.((((.......))))((((((.....)))).......((((((...)))))--)...))....)))).)).)).)))))).. ( -29.90)
>consensus
GCUGGAAGCGGGGCAGAGCAGAAUGCAGUGCAUUGAACGC__GCAGGCAGAGGGCCCAAUAAUCGUACUAAAAUAGUGUGCCAUGCAUC____GCAUGGCAUUCCGGAU
.((((((...................(((((.......(....).(((.....)))........))))).........((((((((.......)))))))))))))).. (-24.71 = -24.90 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:40 2006