Locus 2577

Sequence ID 3L_DroMel_CAF1
Location 7,194,302 – 7,194,397
Length 95
Max. P 0.775101
window4007

overview

Window 7

Location 7,194,302 – 7,194,397
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.01
Mean single sequence MFE -26.65
Consensus MFE -19.23
Energy contribution -20.23
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.72
SVM decision value 0.54
SVM RNA-class probability 0.775101
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7194302 95 + 23771897
GCGGAUUUCGUGUGCACUGUGCGAAUGCAAAUGGAAGCAGGCAGGCGUCGAAAACAUAAAAAUGUGAGAGCAGAAGGGUGCGGCGGAGAAUGG-A------------------------G
.((..((((((.((((((.((((..(((...((....)).)))..)))..............(((....)))..).))))))))))))..)).-.------------------------. ( -25.70)
>DroSec_CAF1 7871 95 + 1
GCGGAUUUCGUGAGCACAGUGCGAAUGCAAAUGGAAGCAGGCAGGCGUCGAAAACAUAAAAAUGUGAGAGCAGAAGGGUGCGGCGGAGAAUGG-A------------------------G
.((..((((((..((((...(((..(((...((....)).)))..)))..............(((....))).....)))).))))))..)).-.------------------------. ( -24.70)
>DroEre_CAF1 7852 94 + 1
GCGGAUUUCGUGUGCACAGUGCGAAUGCAAAUGGAAGCAGGCAGGCGUCGAAAACAUAAAAAUGUGAGAGCAGAAGGGUGCGGCGG--AAUGGGA------------------------G
....(((((((.(((((...(((..(((...((....)).)))..)))..............(((....))).....)))))))))--)))....------------------------. ( -25.00)
>DroYak_CAF1 5064 120 + 1
GCGGAUUUCGUGUGCACAGUGCGAAUGCAAAUGGAAGCAGGCAGGCGUCGAAAACAUAAAAAUGUGAGAGCAGAAGGGUGCGGCAGAGAAUGGGUUGGGUAGCUGGGUAGCUGGGUAGCC
.....((((.(((((((...(((..(((...((....)).)))..)))..............(((....))).....)))).)))))))...(((((..(((((....)))))..))))) ( -31.20)
>consensus
GCGGAUUUCGUGUGCACAGUGCGAAUGCAAAUGGAAGCAGGCAGGCGUCGAAAACAUAAAAAUGUGAGAGCAGAAGGGUGCGGCGGAGAAUGG_A________________________G
.((..((((((.(((((..((((..(((...((....)).)))..).((....((((....))))..))))).....)))))))))))..))............................ (-19.23 = -20.23 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:12 2006