Locus 2571

Sequence ID 3L_DroMel_CAF1
Location 7,188,131 – 7,188,223
Length 92
Max. P 0.976907
window3987 window3988

overview

Window 7

Location 7,188,131 – 7,188,223
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 85.51
Mean single sequence MFE -32.70
Consensus MFE -29.01
Energy contribution -29.13
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -2.69
Structure conservation index 0.89
SVM decision value 1.78
SVM RNA-class probability 0.976907
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7188131 92 + 23771897
GAGUGGCCAGUGAAAGGACUCAGAACGAUGGGCUUCCCUUCGGGCGUCCCAUGGAUGUUCACAAUAGUUUCGCUUGGCCGACUCAAGGAAUU
((((((((((((((((((((((......))))..)))....((((((((...)))))))).......)))))).))))).))))........ ( -35.20)
>DroSim_CAF1 51617 92 + 1
GAGUGGCUAGUGAAAGGACUCAGAACGAUGGGCUUCCCUUCGGGCUUCCCAUGGAUGUCCACAAUAGUUUCGCUUGGCCAACUCAAGAAAUU
(((((((((((((((((((......(.(((((....((....))...))))).)..)))).......)))))).))))).))))........ ( -32.71)
>DroYak_CAF1 55278 81 + 1
GAGUGGCCAGUGAAAGGACUCAGAACGAUGG-----------GGCGUCCCAAGGAUGUCCACAAUGGUUUCACUUGGCUGACUCAAGGAAUU
(((((((((((((((.....((......))(-----------(((((((...)))))))).......)))))).))))).))))........ ( -30.20)
>consensus
GAGUGGCCAGUGAAAGGACUCAGAACGAUGGGCUUCCCUUCGGGCGUCCCAUGGAUGUCCACAAUAGUUUCGCUUGGCCGACUCAAGGAAUU
(((((((((((((((...((((......)))).........((((((((...)))))))).......)))))).))))).))))........ (-29.01 = -29.13 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 7,188,131 – 7,188,223
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 85.51
Mean single sequence MFE -27.10
Consensus MFE -19.39
Energy contribution -21.17
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.539616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7188131 92 - 23771897
AAUUCCUUGAGUCGGCCAAGCGAAACUAUUGUGAACAUCCAUGGGACGCCCGAAGGGAAGCCCAUCGUUCUGAGUCCUUUCACUGGCCACUC
........((((.(((((.(.((((..(((..((((....(((((...(((...)))...))))).))))..)))..)))).)))))))))) ( -30.70)
>DroSim_CAF1 51617 92 - 1
AAUUUCUUGAGUUGGCCAAGCGAAACUAUUGUGGACAUCCAUGGGAAGCCCGAAGGGAAGCCCAUCGUUCUGAGUCCUUUCACUAGCCACUC
........((((.(((..((.((((..(((..((((....(((((...(((...)))...))))).))))..)))..)))).)).))))))) ( -25.70)
>DroYak_CAF1 55278 81 - 1
AAUUCCUUGAGUCAGCCAAGUGAAACCAUUGUGGACAUCCUUGGGACGCC-----------CCAUCGUUCUGAGUCCUUUCACUGGCCACUC
........((((..((((.((((((((.....)).....((..(((((..-----------....)))))..))...)))))))))).)))) ( -24.90)
>consensus
AAUUCCUUGAGUCGGCCAAGCGAAACUAUUGUGGACAUCCAUGGGACGCCCGAAGGGAAGCCCAUCGUUCUGAGUCCUUUCACUGGCCACUC
........((((.(((((.(.((((..(((..((((....(((((...((.....))...))))).))))..)))..)))).)))))))))) (-19.39 = -21.17 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:54 2006