Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 709,070 – 709,160 |
Length | 90 |
Max. P | 0.998286 |
Location | 709,070 – 709,160 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -20.65 |
Consensus MFE | -18.33 |
Energy contribution | -18.95 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -3.11 |
Structure conservation index | 0.89 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 709070 90 + 23771897 CAGUGAUCCCCGAUUUCAAAUUCUCCAUUCCCCAUUACCCCGAUUCCCGAUUCAUUCCCGGGAAAAUACCACAUGCCGGGAUCUCCACUC ..(.((((((.((........))....................((((((.........)))))).............)))))).)..... ( -17.70) >DroSec_CAF1 64702 79 + 1 CAGCGAUCCCCGAUUUCAAAUUCUCCAUUCC-------CCCGAUUCCCGAU----UCCCGGGGAAAUACCACAUGCCGGGAUCGCCACUC ..((((((((.((........))....((((-------((.((........----))..))))))............))))))))..... ( -24.40) >DroSim_CAF1 65535 79 + 1 CAGCGAUCCCCGAUUUCAAAUUCUCCAUUCC-------CCCGAUUCCCGAU----UCCCGGGGAAAUACCACAUGCCGGGAUCGCCACUC ..((((((((.((........))....((((-------((.((........----))..))))))............))))))))..... ( -24.40) >DroYak_CAF1 69104 70 + 1 CAGCGAUCCCUGAUUUUAAAUUC----------------CCGAUGCCCGAU----UCCCGGGGAAAUACCACAUGCCGGGAUCUCCUCUU ....((((((.((........))----------------....(.((((..----...)))).).............))))))....... ( -16.10) >consensus CAGCGAUCCCCGAUUUCAAAUUCUCCAUUCC_______CCCGAUUCCCGAU____UCCCGGGGAAAUACCACAUGCCGGGAUCGCCACUC ..((((((((.((........))....................((((((.........)))))).............))))))))..... (-18.33 = -18.95 + 0.62)
Location | 709,070 – 709,160 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -25.97 |
Consensus MFE | -20.20 |
Energy contribution | -20.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.78 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 709070 90 - 23771897 GAGUGGAGAUCCCGGCAUGUGGUAUUUUCCCGGGAAUGAAUCGGGAAUCGGGGUAAUGGGGAAUGGAGAAUUUGAAAUCGGGGAUCACUG .(((((...(((((((((........(((((((.......)))))))........)))..((((.....))))....)))))).))))). ( -22.69) >DroSec_CAF1 64702 79 - 1 GAGUGGCGAUCCCGGCAUGUGGUAUUUCCCCGGGA----AUCGGGAAUCGGG-------GGAAUGGAGAAUUUGAAAUCGGGGAUCGCUG ....(((((((((.........(((((((((((..----........)))))-------))))))..((........)).))))))))). ( -31.40) >DroSim_CAF1 65535 79 - 1 GAGUGGCGAUCCCGGCAUGUGGUAUUUCCCCGGGA----AUCGGGAAUCGGG-------GGAAUGGAGAAUUUGAAAUCGGGGAUCGCUG ....(((((((((.........(((((((((((..----........)))))-------))))))..((........)).))))))))). ( -31.40) >DroYak_CAF1 69104 70 - 1 AAGAGGAGAUCCCGGCAUGUGGUAUUUCCCCGGGA----AUCGGGCAUCGG----------------GAAUUUAAAAUCAGGGAUCGCUG ....((.((((((......(((.(((((((((...----..))).....))----------------)))))))......)))))).)). ( -18.40) >consensus GAGUGGAGAUCCCGGCAUGUGGUAUUUCCCCGGGA____AUCGGGAAUCGGG_______GGAAUGGAGAAUUUGAAAUCGGGGAUCGCUG ....(((((((((...............(((((.......)))))......................((........)).))))))))). (-20.20 = -20.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:39 2006