Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,187,370 – 7,187,472 |
Length | 102 |
Max. P | 0.863457 |
Location | 7,187,370 – 7,187,472 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 72.65 |
Mean single sequence MFE | -19.25 |
Consensus MFE | -15.23 |
Energy contribution | -14.85 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.16 |
Mean z-score | -1.30 |
Structure conservation index | 0.79 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7187370 102 - 23771897 AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUCGGCAGGCGCUUCCACCCUCCCCACCAAAAAAAA------ ..........(((....)))........((((((((((..((((......))))..)))))))......((.(((.(......)))).))))).........------ ( -20.60) >DroSim_CAF1 50865 102 - 1 AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUCUGCAGGCGCCGCGCCCCCCACCCCCCCGAAAAA------ ...((((...(((....)))..........((((((((..((((......))))..)))))))).....))))((((...))))..................------ ( -23.70) >DroWil_CAF1 106394 89 - 1 AAAUGCAACAGCAAUUAUGCAAUAAUUUGUGGGUAGCAAAUGAAUAGAGAUUUAUAUGCCAUC---CUU-----------UCCCCUUCC----C-CAAAUACACACAC ...(((....))).....((((....))))((((.(((.((((((....)))))).))).)))---)..-----------.........----.-............. ( -13.90) >DroYak_CAF1 54531 85 - 1 AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCCCCCUC----------------CUCCCCACC-CAAAAAA------ ...(((....))).....((((....))))((((((((..((((......))))..)))))))).....----------------.........-.......------ ( -18.80) >consensus AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUC___________CCCCCCUCCCCACC_CAAAAAA______ ...(((....))).....((((....))))((((((((..((((......))))..))))))))............................................ (-15.23 = -14.85 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:49 2006