| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,186,580 – 7,186,676 |
| Length | 96 |
| Max. P | 0.764970 |
| Location | 7,186,580 – 7,186,676 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.66 |
| Mean single sequence MFE | -40.67 |
| Consensus MFE | -26.39 |
| Energy contribution | -27.17 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7186580 96 + 23771897 CA-CAUCUCCAAUGGCAAUGGCCACGGAUGCCAGGACCAACAGGCACCAGCCGGAAACGGAAGCUG-------------------GUGCUUCGCAUUAUGACCAAUGCGAAAUUGC ..-....(((..(((((.((....))..))))))))......(((((((((((....))...))))-------------------)))))(((((((......)))))))...... ( -36.40) >DroSim_CAF1 50031 115 + 1 CACCCUCUCCUAUGGCAAUGGCCACGGAUGCCAGGACCAACAGGCACCAGCCGGAAACGGAAGCGGCCUGACCUGACCCAUGGCGGAGC-CAGCGUUAUGACCAAUGCGAAAUUGC ......((((..((((....)))).....((((((..((.(((((..(..(((....)))..)..)))))...))..)).)))))))).-..(((((......)))))........ ( -40.50) >DroYak_CAF1 53609 114 + 1 CA-CUUCCCCAAUGGCAAUGGCCACGGAUGCCAGGACCAACAGGCACCAGCCGGAAACGGAAGCGGCCUGACCUGACCCGUGGCGGAGC-CAGCGUUAUGACCAAUGCGAAAUUGC ..-.(((.....((((..(.(((((((....((((.....(((((..(..(((....)))..)..))))).))))..))))))).).))-))(((((......))))))))..... ( -45.10) >consensus CA_CAUCUCCAAUGGCAAUGGCCACGGAUGCCAGGACCAACAGGCACCAGCCGGAAACGGAAGCGGCCUGACCUGACCC_UGGCGGAGC_CAGCGUUAUGACCAAUGCGAAAUUGC ..............(((((((((.(((.((((.(......).))))))..(((....)))..).))))........................(((((......)))))...))))) (-26.39 = -27.17 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:48 2006