| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,182,677 – 7,182,787 |
| Length | 110 |
| Max. P | 0.516402 |
| Location | 7,182,677 – 7,182,787 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.60 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.50 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7182677 110 + 23771897 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCGAAACUUUCGACGAGAUUUUCGGUCGAAACAAAAUACAAAAAGACCAAAGCAGCCCAC--------AAAAA--A .......((.(((((.(((...((((((((.((((.((......)))))).))))))))..))).))((((.................))))......))).))--------.....--. ( -23.23) >DroPse_CAF1 49420 100 + 1 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCAAAACUUUCGACGAGAUUUUCGGUCGAAACAGAAUACGAAAGGACCGGAACAA--------------------A .......((((....))))...((((((((.((((.((......)))))).))))))))....(((((((((...)......(....)))))))))...--------------------. ( -22.50) >DroSim_CAF1 46144 109 + 1 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCGAAACUUUCGACGAGAUUUUCGGUCGAAACAAAAUACAAAAAGACCAACGCAGCCUGC--------AAAAA--- .......((.(((((.(((...((((((((.((((.((......)))))).))))))))..))).))((((.................))))......))).))--------.....--- ( -23.53) >DroEre_CAF1 53589 119 + 1 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCGAAACUUUCGACGAGAUUUUCGGUCGAAACAAAAUACAAAAAGGGCAACACAACCCCCCAAAAUAAAAAAA-AA ........((((((((...(((((((((((.((((.((......)))))).))))))))...)))...))))................(((........))).))))..........-.. ( -19.90) >DroAna_CAF1 45024 109 + 1 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCGAAACUUUCGACGAGAUUUUCGGCAGAAACAAAAUACAAAAGGGCCAACAUUUCC-----------AAAAAAAG .......((((((.........((((((((.((((.((......)))))).))))))))....((((....))))..............))))))......-----------........ ( -21.90) >DroPer_CAF1 58531 100 + 1 CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCAAAACUUUCGACGAGAUUUUCGGUCGAAACAGAAUACGAAAGGACCGGAACAA--------------------A .......((((....))))...((((((((.((((.((......)))))).))))))))....(((((((((...)......(....)))))))))...--------------------. ( -22.50) >consensus CUUUCAAGUUGGCGACAAUAAACGUUGAAACUUUUAGUUUUAUUGCGAAACUUUCGACGAGAUUUUCGGUCGAAACAAAAUACAAAAAGACCAAAACAACC___________AAAAA__A .......((((....))))...((((((((.((((.((......)))))).))))))))........((((.................))))............................ (-16.75 = -16.50 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006