| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,178,764 – 7,178,865 |
| Length | 101 |
| Max. P | 0.939077 |
| Location | 7,178,764 – 7,178,865 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.27 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.939077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7178764 101 + 23771897 GCGGCAAUCCUUUGAGAUGGAUGUGUGUCAGC---AGAUGCAUC--GUAUCAUAUGGAGCA--CGCUGGGGCACAAGUUAACCCACUUGGCUCCAUAUCGACAUGC--CA ..(((.((((........))))..(((((...---.(((((...--)))))(((((((((.--...((((...........))))....))))))))).)))))))--). ( -37.90) >DroPse_CAF1 43993 96 + 1 GCUUCAAUCAUUUGA---UGAUGUGGGUCAGGAGGAGAUGCAUCCUGCAUCCUA---------CAUCUGGGAACAAGUUAACCCACUUAGCUCCA--UCGACAUGCGACG ........(((((((---(((((((((...(.((((......)))).)..))))---------))))..(((.(((((......)))).).))))--)))).)))..... ( -25.70) >DroSim_CAF1 42209 101 + 1 GCGGCAAUCCUUUGAGAUGGAUGUGUGUCAGC---AGAUGCAUC--GUAUCAUAUGGAGCG--CGCUGGGGCACAAGUUAACCCACUUGGCUCCAUAUCGACAUGC--CA ..(((.((((........))))..(((((...---.(((((...--)))))(((((((((.--.((....)).(((((......)))))))))))))).)))))))--). ( -37.80) >DroEre_CAF1 46172 101 + 1 GCGGCAAUCCUUUGAGAAGGAUGUGUGUCAGC---AGAUGCAUC--GUAUCAUAUGGAGCA--CGCCGGGGCACAAGUUAACCCACUUGUCUCCAUAUCGACAUGC--CA ..(((.((((((....))))))..(((((...---.(((((...--)))))((((((((..--.((....))((((((......)))))))))))))).)))))))--). ( -36.10) >DroAna_CAF1 41441 94 + 1 ------GUCCUUUG--AAGGAUGUGUGUCAGG---AGGUGCAUC-AGCGUCCUCUUCGCCAGGCCCUCGGGCUCAAGUUAACCCACUUGGCUCCA--UCGACAGGC--AA ------(((((...--.)))))((.((((..(---(((.((...-.(((.......)))...))))))((((.(((((......))))))).)).--..)))).))--.. ( -34.70) >DroPer_CAF1 53016 96 + 1 GCUUCAAUCAUUUGA---GGAUGUGUGUCAGGAGGAGAUGCAUCCUGCAUCCUA---------CAUCUGGGAACAAGUUAACCCACUUAGCUCCA--UCGACAUGCGACG .((((((....))))---)).((((((((.((((..(((((.....)))))...---------....((((..........)))).....)))).--..))))))))... ( -28.80) >consensus GCGGCAAUCCUUUGA_A_GGAUGUGUGUCAGC___AGAUGCAUC__GCAUCAUAUGGAGCA__CGCCGGGGCACAAGUUAACCCACUUGGCUCCA__UCGACAUGC__CA ......((((........))))(((((((.......(((((.....))))).................(((..(((((......)))))..))).....))))))).... (-20.32 = -20.27 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:44 2006