| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,167,044 – 7,167,140 |
| Length | 96 |
| Max. P | 0.938926 |
| Location | 7,167,044 – 7,167,140 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -11.70 |
| Energy contribution | -12.87 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.938926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7167044 96 - 23771897 CUCACACUCAC--------AAUCUGCUGGCGACUGCUGUCAAUGACAGGGCAAAUAAAAUGCAACAAAGCUUGUUGUAAAACGCGCAAAAAUGAAAAUCAAUAG .......(((.--------....(((..(((....(((((...)))))...........(((((((.....)))))))...))))))....))).......... ( -16.80) >DroPse_CAF1 30862 82 - 1 ----------------------AUGGUGGCUGUUGCUGUCAAUGACAGCGCAAAUAAAAUGCAACAAAGCGUGUUGUAAAACGCGCAGAAAUGAAAAUCAAUAG ----------------------.((((...((((((((((...))))))(((.......)))))))..(((((((....)))))))..........)))).... ( -23.60) >DroGri_CAF1 39516 81 - 1 --------------------AUGU-GUGGCAACUGCUGUCAAUGACAGCGCAAAUA-AAUGCAACAAAGUUC-AUGAAAAACACGCAAAAAUGAAAAUCAAUAG --------------------.(((-(((......((((((...))))))(((....-..)))..........-........))))))................. ( -18.70) >DroEre_CAF1 34493 104 - 1 CUCACACUUGCACACUCGCAAUCUGCUGGCGACUGCUGUCAAUGACAGGGCAAAUAAAAUGCAACAAAGCUUGUUGUAAAACGCGCAAAAAUGAAAAUCAAUAG .(((...((((......((.....))..(((....(((((...)))))...........(((((((.....)))))))...)))))))...))).......... ( -21.60) >DroWil_CAF1 78586 90 - 1 CUGG-------------GCUAUGU-GUGGCAACUGCUGUCAAUGACAGCGCAAAUAAAAUGCCACAACGCUUGUUGUAAAACACGCAAAAAUGAAAAUCAAUAG ....-------------.((((.(-((((((..(((((((...))))))).........)))))))..((.((((....)))).))..............)))) ( -22.50) >DroPer_CAF1 39810 82 - 1 ----------------------AUGGUGGCUGUUGCUGUCAAUGACAGCGCAAAUAAAAUGCAACAAAGCGUGUUGUAAAACGCGCAGAAAUGAAAAUCAAUAG ----------------------.((((...((((((((((...))))))(((.......)))))))..(((((((....)))))))..........)))).... ( -23.60) >consensus ____________________AUAUGGUGGCAACUGCUGUCAAUGACAGCGCAAAUAAAAUGCAACAAAGCUUGUUGUAAAACGCGCAAAAAUGAAAAUCAAUAG ............................((...(((((((...))))))).........(((((((.....)))))))......)).................. (-11.70 = -12.87 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:39 2006