| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,166,629 – 7,166,726 |
| Length | 97 |
| Max. P | 0.536563 |
| Location | 7,166,629 – 7,166,726 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.42 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -14.05 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7166629 97 - 23771897 -----GUUGACGUCAGUCAUAGAGCGUGCAAAUGUUGACCUACAUACAAAACGUUGAGCAAACAGGCGCAUAAAUGCCACGUUAAACAACUGCAA---------CAACA------AC -----((((..(.((((.....(((((((.((((((.............))))))..)).....((((......))))))))).....)))))..---------)))).------.. ( -22.52) >DroPse_CAF1 30368 97 - 1 -----GUUGACGUCAGUCAUAGAGCGUGCAAAUGUUGACCUACAUACAAAACGCUGAGCAAACAGGCGCAUAAAUGCCACGUUCAACAACUGCAA---------CAACA------AG -----((((..(.((((....(((((((((.((((......))))......((((.........))))......)).)))))))....)))))..---------)))).------.. ( -23.70) >DroGri_CAF1 39103 101 - 1 -----GUUGACGUCAGUCACACAGCGUGCAAAUGUUGACCUACAUACAAAACGCUGAGCAAACAGGCGUAUAAAUGCCACGCCAACCAAAAACAA---------AAACAACAACG-- -----((((.(((........((((((....((((......)))).....))))))........(((((....)))))))).)))).........---------...........-- ( -23.20) >DroWil_CAF1 77853 106 - 1 -----GUUGACGUCAGUCAUAUAGAGUACAAAUGUUGACCUACAUACAAAACGCUGAGCAAACAGGCGCAUAAAUGCCGCGCCAAACAACUGCAAACGGACAACCAACA------AC -----((((.(((((((....(((.((....((((......)))).....)).)))........(((((.........))))).....))))...)))..)))).....------.. ( -19.60) >DroAna_CAF1 29779 92 - 1 CUCCCUUUGACGUCCGUCAUAGAGCGUGCAAAUGUUGACCUACAUAGAAAACGUUGAGCAAACAGGCGCAUAAAUGCGACGUUAAACAACAG------------------------- .....(((((((((.........((.(((.((((((...((....))..))))))..))).....))(((....))))))))))))......------------------------- ( -19.40) >DroPer_CAF1 39322 97 - 1 -----GUUGACGUCAGUCAUAGAGCGUGCAAAUGUUGACCUACAUACAAAACGCUGAGCAAACAGGCGCAUAAAUGCCACGUUCAACAACUGCAA---------CAACA------AG -----((((..(.((((....(((((((((.((((......))))......((((.........))))......)).)))))))....)))))..---------)))).------.. ( -23.70) >consensus _____GUUGACGUCAGUCAUAGAGCGUGCAAAUGUUGACCUACAUACAAAACGCUGAGCAAACAGGCGCAUAAAUGCCACGUUAAACAACUGCAA_________CAACA______A_ ......(((((((.........(((((....((((......)))).....))))).........((((......)))))))))))................................ (-14.05 = -14.47 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:38 2006