Locus 256

Sequence ID 3L_DroMel_CAF1
Location 701,106 – 701,215
Length 109
Max. P 0.957444
window384

overview

Window 4

Location 701,106 – 701,215
Length 109
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -28.04
Consensus MFE -24.14
Energy contribution -24.54
Covariance contribution 0.40
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.86
SVM decision value 1.48
SVM RNA-class probability 0.957444
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 701106 109 + 23771897
AAAGUGCGGAAAAUACAUGCAUAUGUACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG
....((((.......(((((((......))))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -29.80)
>DroSec_CAF1 56713 105 + 1
AAAGUGCGGAAAAUACAUGCAU----ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAUCACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG
....((((.......((((((.----...)))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -28.50)
>DroSim_CAF1 56966 105 + 1
AAAGUGCGGGAAAUACAUGCAU----ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG
....((((.......((((((.----...)))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -28.50)
>DroEre_CAF1 58837 104 + 1
AAAGUGCGGAAAAUACAUGCAC------AUGUAU--GUAGGAAAACAAAGCGCUUAAAUGGAAAACACAGGUGGUGGGGUGUUGUUGGCUCGCAACUGUGGCCAACAUGCAG
.((((((......(((((((..------..))))--)))(.....)...))))))..........(((.....)))...((((((((((.(((....)))))))))).))). ( -31.20)
>DroYak_CAF1 60812 101 + 1
AAAGUGCGGAAAAUACAUACAC------A--UAU--GUAGGAAAACAAAACGCUUAAAUGGAAAACACAC-AGGUGGGGUGUUGUUGGCUCGCAACUCUGGCCAACAUGCGG
....((((.....((((((...------.--)))--)))....((((...(((((...((.....))...-)))))...))))(((((((.(.....).))))))).)))). ( -22.20)
>consensus
AAAGUGCGGAAAAUACAUGCAU____ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA___GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG
....((((.......(((((((......)))))))........((((...((((....((.......))...))))...))))(((((((.........))))))).)))). (-24.14 = -24.54 +   0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:37 2006