Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 701,106 – 701,215 |
Length | 109 |
Max. P | 0.957444 |
Location | 701,106 – 701,215 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -24.14 |
Energy contribution | -24.54 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 701106 109 + 23771897 AAAGUGCGGAAAAUACAUGCAUAUGUACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG ....((((.......(((((((......))))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -29.80) >DroSec_CAF1 56713 105 + 1 AAAGUGCGGAAAAUACAUGCAU----ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAUCACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG ....((((.......((((((.----...)))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -28.50) >DroSim_CAF1 56966 105 + 1 AAAGUGCGGGAAAUACAUGCAU----ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA---GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG ....((((.......((((((.----...)))))).............(((((((...((.......))---....)))))))(((((((.(.....).))))))).)))). ( -28.50) >DroEre_CAF1 58837 104 + 1 AAAGUGCGGAAAAUACAUGCAC------AUGUAU--GUAGGAAAACAAAGCGCUUAAAUGGAAAACACAGGUGGUGGGGUGUUGUUGGCUCGCAACUGUGGCCAACAUGCAG .((((((......(((((((..------..))))--)))(.....)...))))))..........(((.....)))...((((((((((.(((....)))))))))).))). ( -31.20) >DroYak_CAF1 60812 101 + 1 AAAGUGCGGAAAAUACAUACAC------A--UAU--GUAGGAAAACAAAACGCUUAAAUGGAAAACACAC-AGGUGGGGUGUUGUUGGCUCGCAACUCUGGCCAACAUGCGG ....((((.....((((((...------.--)))--)))....((((...(((((...((.....))...-)))))...))))(((((((.(.....).))))))).)))). ( -22.20) >consensus AAAGUGCGGAAAAUACAUGCAU____ACAUGCAUGGGUAAGAAAACAAAACGCUUAAAUGGAAAACACA___GGUGGGGUGUUGUUGGCCCGCAACUCUGGCCAACAUGCAG ....((((.......(((((((......)))))))........((((...((((....((.......))...))))...))))(((((((.........))))))).)))). (-24.14 = -24.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:37 2006