| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,165,156 – 7,165,260 |
| Length | 104 |
| Max. P | 0.987585 |
| Location | 7,165,156 – 7,165,260 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.72 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -24.24 |
| Energy contribution | -24.18 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7165156 104 - 23771897 ------------CACAAAUGCUCACCGGGACAAAACUCAAUGAGUCAAUGACUUUUUGGUGUCGUUCGUUGAUGCGCAACGCGGUCCCGUUGUCAUUAGCAGCGACACCAGUACCA---- ------------..((...(((((..(((......)))..)))))...)).....(((((((((((.(((((((.((((((......)))))))))))))))))))))))).....---- ( -37.30) >DroPse_CAF1 28977 102 - 1 CAGAAG------GAGGGAGGGAGACAG-----GGACUCAAUGAGUCAAUGACUUUUUGAUGUCGCUCGUUGAUGCGCAACGCGGUCCCGUUGUCAUUAGUAACGACACUGACA------- (((...------.......(....).(-----(((((((((((((....(((........))))))))))))((((...)))))))))(((((........))))).)))...------- ( -31.20) >DroGri_CAF1 35897 101 - 1 -----------------UCGCAUACAGGG--AAAACUCAACGAGUCAAUGACUUUCUGGUGUCGUUCGUUGAUGCGCGACACGGCUUCGUUGUCAUUAGUAACAACACUGACACGCACUC -----------------..((...(((((--(....))...(((((...)))))))))((((((...((((.(((..((((((....)).))))....))).))))..)))))))).... ( -25.20) >DroWil_CAF1 76518 120 - 1 GAGCAGCACCAACACCAACACAUACACGGACAAAACUCAAUGAGUCAAUGACUUUUUGGUGUCGUUCGUUGAUGCGCGACGCGGUGUCGUUGUCAUUAGUAACAACACCGACACGCAUAC ((((.(((((((..((...........))............(((((...))))).))))))).))))....(((((.(...((((((.((((.(....))))).)))))).).))))).. ( -34.90) >DroAna_CAF1 28707 95 - 1 --------------------CACACUGGGAGCAAACUCAAUGAGUCAAUGACUUUUUGGUGUCGCUCGUUGAUGCGCAACGUGGUCCCGUUGUCAUUAGCAGCGACACCAACAC-A---- --------------------..((.((((......)))).))((((...))))..(((((((((((.(((((((.((((((......))))))))))))))))))))))))...-.---- ( -38.00) >DroPer_CAF1 37846 102 - 1 CAGAAG------GAGGGAGGGAGACAG-----GGACUCAAUGAGUCAAUGACUUUUUGGUGUCGCUCGUUGAUGCGCAACGCGGUCCCGUUGUCAUUAGUAACGACACUGACA------- ((((((------(......(....)..-----.(((((...))))).....)))))))((((((.(..((((((.((((((......))))))))))))..))))))).....------- ( -32.70) >consensus _____________A___ACGCACACAGGG__AAAACUCAAUGAGUCAAUGACUUUUUGGUGUCGCUCGUUGAUGCGCAACGCGGUCCCGUUGUCAUUAGUAACGACACCGACAC______ .........................................(((((...))))).(((((((((((.(((((((.((((((......))))))))))))))))))))))))......... (-24.24 = -24.18 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:37 2006