| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,160,116 – 7,160,212 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 7,160,116 – 7,160,212 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -27.11 |
| Consensus MFE | -15.86 |
| Energy contribution | -15.42 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7160116 96 - 23771897 UCGCAUGUAGAG-------------------UGCUGCAGGUGUUGCAGAAAACCAAGCUGGAAAAACAAUUUGCGAAAGAAAUUUGUGGAAAAUGUAGACAGCUCAAAUGCGCUU .(((((...(((-------------------(.(((((....(..((((....((((.((......)).))))(....)...))))..)....)))))...))))..)))))... ( -26.10) >DroSec_CAF1 22650 96 - 1 UCGCAUGUAGAG-------------------UGCUGCAGGUGUUGCAGAAAACCAAGCUGGGAAAACGAUUUGGGAAAGAAAUUUGUGGAAAAUGUAGACAGCUCAAAUGCGCUU .(((((...(((-------------------(.(((((....(..((((...(((((.((......)).)))))........))))..)....)))))...))))..)))))... ( -26.40) >DroSim_CAF1 21239 96 - 1 UCGCAUGUAGAG-------------------UGCUGCAGGUGUUGCAGAAAACCAAGCUGGGAAAACAAUUUGGGAAAGAAAUUUGUGGAAAAUGUAGACAGCUCAAAUGCGCUU .(((((...(((-------------------(.(((((....(..((((...(((((.((......)).)))))........))))..)....)))))...))))..)))))... ( -27.10) >DroEre_CAF1 27347 113 - 1 CUGUAUGUAGAGACUGAAU--GCGCCAUGACUGCUGCAGGUGUUGCAGAAAACCAAACUGGGAAAACAAUUUGGGAAAGAAAUUUGUGGAAAAUGUAGACAGCUCAAAUGCGCUU ..((((...(((.(((..(--((((((..(((((.((....)).))))....(((((.((......)).))))).........)..)))....))))..))))))..)))).... ( -29.30) >DroYak_CAF1 25411 115 - 1 UUGUAUGUGGAGACUGAAUGUGCGCCAGGACUGCUGCAGGUGUUGCAGAAAACCAAGCUGGGAAAACAAUUUGGGAAAGAAAUUUGUGGAAUAUGUGGACAGCUCAAAUGCGCUU ..((((...(((.(((.(((((..(((.((((((.((....)).))))....(((((.((......)).))))).........)).)))..)))))...))))))..)))).... ( -30.10) >DroAna_CAF1 24385 107 - 1 AUAUAUGUAGAGCUCGAUA--UCG----GGGUGC--CAGGUACUGCAGAAACCCGAGCUGGGAAAACAAUUUGGAGAAGAAAUUUGCGGCAAAUGGAGACAGUCGAAAUGCGCUU .........(((((((((.--(((----((.(((--........)))....)))))((((.(((..................))).))))...((....))))))).....)))) ( -23.67) >consensus UCGCAUGUAGAG___________________UGCUGCAGGUGUUGCAGAAAACCAAGCUGGGAAAACAAUUUGGGAAAGAAAUUUGUGGAAAAUGUAGACAGCUCAAAUGCGCUU .(((((...(((...................(((((((....(((((((...(((((.((......)).)))))........)))))))....))))).)).)))..)))))... (-15.86 = -15.42 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:36 2006