Locus 2557

Sequence ID 3L_DroMel_CAF1
Location 7,152,732 – 7,152,832
Length 100
Max. P 0.566489
window3967

overview

Window 7

Location 7,152,732 – 7,152,832
Length 100
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 77.03
Mean single sequence MFE -23.72
Consensus MFE -15.19
Energy contribution -15.72
Covariance contribution 0.53
Combinations/Pair 1.09
Mean z-score -1.25
Structure conservation index 0.64
SVM decision value 0.07
SVM RNA-class probability 0.566489
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7152732 100 - 23771897
AUUUCGUUUUU---UUUUUUUCCGGCAGUC-------------CUGCUUCAUUUGCAGUCCGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
...........---.........(((.(..-------------((((.......))))..)..((((....))))....((((....(((((....))))).....)))))))... ( -19.60)
>DroVir_CAF1 23438 96 - 1
------GAUUU-U-UCAACUUCUUGCAGU------------CUGCACUUCAUUUGCAGUUUGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
------(((((-.-.(((.((.((((((.------------(...(((.((...((((((.((.(((....))))).)))))).)))))...).)))))).)).))).)))))... ( -23.60)
>DroPse_CAF1 17067 113 - 1
UUUUUGUUUUU---UGUCUUUGCGACAGUCUGUAGCCGGAUCCGCACUUCAUUUUCAGUUCGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
.........((---((.(((.(((((((.(.(((((((....))....(((....(((((.((.(((....))))).)))))..))))))))).)))).......)))))).)))) ( -23.91)
>DroEre_CAF1 20153 96 - 1
AUCUUUUUUCU-----G--UUGCGGCAAUC-------------CAGCUUCAUUUGCAGUUCGUUGGCAGCUGCCACUAAUUGUUUGAGUAACGUCUGUAAUGAUUUGCAAGUCAAA
...........-----(--(((((((....-------------..)))(((...((((((.((.(((....))))).)))))).))))))))(.((((((....)))).)).)... ( -22.20)
>DroWil_CAF1 64238 109 - 1
AUUCCUUCCUUCAUCCUCCUUGCU-UGCU------CUUCAUCUGCACUUCAUUUGCAGUUUGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
...................(((((-(((.------..((((.((((.((((...((((((.((.(((....))))).)))))).)))).......))))))))...))))).))). ( -24.00)
>DroPer_CAF1 25910 113 - 1
UUUUUGUUUUU---UGUCUUUGCGACAGUCUGUAGCCGGAUCCGUACUUCAUUUGCAGUUCGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
..(((((....---.(((.(((((((.(((((....)))))..(((.((((...((((((.((.(((....))))).)))))).)))).)))))).)))).)))..)))))..... ( -29.00)
>consensus
AUUUUGUUUUU___UCUCUUUGCGGCAGUC___________C_GCACUUCAUUUGCAGUUCGUUGGCAGCUGCCACUAAUUGUUUGAGUUACGUCUGUAAUGAUUUGCAAGUCAAA
.......................(((.....................((((...((((((.((.(((....))))).)))))).)))).......(((((....))))).)))... (-15.19 = -15.72 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:35 2006