Locus 2556

Sequence ID 3L_DroMel_CAF1
Location 7,152,468 – 7,152,570
Length 102
Max. P 0.518812
window3966

overview

Window 6

Location 7,152,468 – 7,152,570
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 80.66
Mean single sequence MFE -26.92
Consensus MFE -17.25
Energy contribution -18.33
Covariance contribution 1.09
Combinations/Pair 1.15
Mean z-score -1.41
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.518812
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7152468 102 + 23771897
UUGCAAAAACCCGCAACCUAUCAAGUUGAUGGGAUU-UCGUCUCCUGCGUUCGACAUAUUGCUUAAGUUUUAAUUAAAAUAUAGCACAGCUGGGCGACGCAGG
((((........))))((((((.....))))))...-......(((((((.((.((...((((...(((((....)))))..))))....))..))))))))) ( -27.80)
>DroPse_CAF1 16736 89 + 1
--------------AUCUCAUCAAAGUGAUAGCACUCUCGGCUGCUGCCCUCGACAUAUUGCAUAAGUUUUAAUUAAAAUAUUGCGCAGAUGGGCGACGCAGG
--------------..........((((....)))).....(((((((((((.......((((...(((((....)))))..))))..)).)))))..)))). ( -18.30)
>DroSim_CAF1 13629 102 + 1
UGGCAAAAUCCCGCAACCUAUCAAGUUGAUGGGAUU-UCGUCUCCUGCGUUCGACAUAUUGCUUAAGUUUUAAUUAAAAUAUAACACAGCUGGGCGACGCAGG
.(((.((((((((((((.......)))).)))))))-).))).(((((((.((.(.....(((...(((.((.......)).)))..)))...)))))))))) ( -30.90)
>DroEre_CAF1 19896 102 + 1
CGGCGCAGCCCAGCAACCUAUCAAGUUGAUGGGAUU-CCGUCGCCUGCGUUCGACAUAUUGCUUAAGUUUUAAUUAAAAUAUUGCACAGCUGGGCGACGCAGG
..(((..(((((((..((((((.....))))))...-..((((........))))....(((....(((((....)))))...)))..)))))))..)))... ( -36.00)
>DroYak_CAF1 17513 102 + 1
UUGCAAAACCAAGCAACCCAUCAAGUUGAUGGGAUU-UCGUCGCCUGCGUUCGACAUAUUGCUUAAGUUUUAAUUAAAAUAUUGCACAGCUGGGCGACGCAGG
((((............((((((.....))))))...-..((((((((((.....)....(((....(((((....)))))...)))..)).))))))))))). ( -30.20)
>DroPer_CAF1 25579 89 + 1
--------------AUCUCAUCAAAGUGAUAGCACUCUCGGCUGCUGCCCUCGACAUAUUGCAUAAGUUUUAAUUAAAAUAUUGCGCAGAUGGGCGACGCAGG
--------------..........((((....)))).....(((((((((((.......((((...(((((....)))))..))))..)).)))))..)))). ( -18.30)
>consensus
U_GCAAAA_CC_GCAACCCAUCAAGUUGAUGGGAUU_UCGUCUCCUGCGUUCGACAUAUUGCUUAAGUUUUAAUUAAAAUAUUGCACAGCUGGGCGACGCAGG
................((((((.....))))))..........((((((.(((.((...((((...(((((....)))))..))))....))..))))))))) (-17.25 = -18.33 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:34 2006