Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,151,595 – 7,151,688 |
Length | 93 |
Max. P | 0.823468 |
Location | 7,151,595 – 7,151,688 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 73.84 |
Mean single sequence MFE | -20.36 |
Consensus MFE | -15.25 |
Energy contribution | -15.58 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -0.98 |
Structure conservation index | 0.75 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7151595 93 + 23771897 UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCUCGAGGCGUCUGCC-------CCCCAUCCACC-----AUCCACCAUCUACCAC-CGCACC .((((((((((((((((...))).)))))).)))))))....((((....))))......-------...........-----................-...... ( -17.60) >DroVir_CAF1 22224 96 + 1 UUUGAGUGUUACGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACU-------UCAGCUCCGGCUCCUCGCUGAGCCCCGUCAUUGACU--- .(((.((((.(((......))))))).)))(((.........((((....))))......-------...((((.(((.....)))))))........)))..--- ( -21.40) >DroGri_CAF1 24182 96 + 1 UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCAUCUGCU-------CCAGCUCCAGUUCCUCGCUGAGCCUCAAUAUUGCCC--- .((((((((((((((((...))).)))))).)))))))............((((......-------...((((.(((.....)))))))........)))).--- ( -23.03) >DroSim_CAF1 12763 93 + 1 UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCUCGAGGCGUCUGCC-------CCCCAUCCACC-----AUCCAGCACCUACCAC-CGCACC .((((((((((((((((...))).)))))).)))))))....((((....))))......-------...........-----.....((.........-.))... ( -17.90) >DroWil_CAF1 62750 90 + 1 UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACUGC----UCCACAUCC--------UUCCAU--CCUUCCAU-C-CAUC .((((((((((((((((...))).)))))).)))))))....((((....))))........----.........--------......--........-.-.... ( -16.90) >DroAna_CAF1 16804 95 + 1 UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACAGGGAGGUCCUUUUCC--C-----C-UCUGCCUCUCCCUC-CGCA-- .((((((((((((((((...))).)))))).)))))))....((((....)))).....(((((((..(......--.-----.-...)..))))))).-....-- ( -25.30) >consensus UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACU_______CCACAUCCA_C_____AUCCAGCCCCUACCAC_CGCA__ .((((((((((((((((...))).)))))).)))))))....((((....)))).................................................... (-15.25 = -15.58 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:33 2006