Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,151,026 – 7,151,128 |
Length | 102 |
Max. P | 0.951426 |
Location | 7,151,026 – 7,151,128 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -22.77 |
Energy contribution | -23.90 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.29 |
Structure conservation index | 0.81 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7151026 102 + 23771897 UGCCACUUGCAUCUUGGCCCCUGCCACACU------UUCAAGUUGCAGAAGCGAAAAGUUUCGUGGCAAAAGUUUAUGAAAAAUUAUGAAUUUCAAUUUAGCCUAAUC ((((((.((((.((((((....))))....------....)).))))(((((.....))))))))))).((((((((((....))))))))))............... ( -26.80) >DroSec_CAF1 13708 102 + 1 UGCCACCUGCAGCUUGGCCCCGGCCACAUU------UUCAAGUGGCAGAAGCGAAAAGUUUCGUGGCAAAAGUUUAUGAAAAAUUAUGAAUUUCAAUUUAGCCGAAUC ((((((.((.....((((....))))....------..)).))))))(((((.....))))).((((((((((((((((....)))))))))....))).)))).... ( -29.00) >DroEre_CAF1 18417 102 + 1 UGCCACUUGCAGCUUGGCCCCUUCCACUGC------GCCAAGUGGCAGAGGCGAAAAGUUUCGUGGCAAAAGCUUAUGAGAAAUUAUGAAUUUCAAUUUAGCCGAAUC ((((((.(((.(((((((.(........).------))))))).)))(((((.....)))))))))))...(((.....(((((.....))))).....)))...... ( -32.70) >DroYak_CAF1 16053 108 + 1 UGCCACUUGCAGCUUGGCCCUCUCCACUCUUUCUCUCUCAAGUGGCAAAAGCGAAAAGUUUCGUGGCUUAAGCUUAUGAAAUAUUAUGAAUUUCAAUUUAGCCAAAUC (((((((((.((..(((......)))..))........)))))))))...(((((....)))))((((.((.....((((((.......)))))).)).))))..... ( -24.10) >consensus UGCCACUUGCAGCUUGGCCCCUGCCACACU______UUCAAGUGGCAGAAGCGAAAAGUUUCGUGGCAAAAGCUUAUGAAAAAUUAUGAAUUUCAAUUUAGCCGAAUC .(((((.(((.((((((....................)))))).)))(((((.....))))))))))..((((((((((....))))))))))............... (-22.77 = -23.90 + 1.13)
Location | 7,151,026 – 7,151,128 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -29.95 |
Consensus MFE | -24.24 |
Energy contribution | -25.93 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.13 |
Mean z-score | -2.18 |
Structure conservation index | 0.81 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7151026 102 - 23771897 GAUUAGGCUAAAUUGAAAUUCAUAAUUUUUCAUAAACUUUUGCCACGAAACUUUUCGCUUCUGCAACUUGAA------AGUGUGGCAGGGGCCAAGAUGCAAGUGGCA .............(((((.........)))))........((((((.....((((.((((((((.(((....------)))...)))))))).)))).....)))))) ( -26.60) >DroSec_CAF1 13708 102 - 1 GAUUCGGCUAAAUUGAAAUUCAUAAUUUUUCAUAAACUUUUGCCACGAAACUUUUCGCUUCUGCCACUUGAA------AAUGUGGCCGGGGCCAAGCUGCAGGUGGCA .....(((.(((.(((((.........))))).....))).))).((((....)))).....((((((((..------....((((....)))).....)))))))). ( -29.00) >DroEre_CAF1 18417 102 - 1 GAUUCGGCUAAAUUGAAAUUCAUAAUUUCUCAUAAGCUUUUGCCACGAAACUUUUCGCCUCUGCCACUUGGC------GCAGUGGAAGGGGCCAAGCUGCAAGUGGCA .....((((.....(((((.....))))).....))))..(((((((((....)))((((((.(((((....------..))))).))))))..........)))))) ( -31.90) >DroYak_CAF1 16053 108 - 1 GAUUUGGCUAAAUUGAAAUUCAUAAUAUUUCAUAAGCUUAAGCCACGAAACUUUUCGCUUUUGCCACUUGAGAGAGAAAGAGUGGAGAGGGCCAAGCUGCAAGUGGCA .....((((....((((((.......))))))..))))...(((((....((((((((((((....(((....))).)))))))))))).((......))..))))). ( -32.30) >consensus GAUUCGGCUAAAUUGAAAUUCAUAAUUUUUCAUAAACUUUUGCCACGAAACUUUUCGCUUCUGCCACUUGAA______AGAGUGGAAGGGGCCAAGCUGCAAGUGGCA .....((((....(((((.........)))))..))))...((((((((....)))(((((((((((((..........)))))))))))))..........))))). (-24.24 = -25.93 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:32 2006